View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_9 (Length: 599)
Name: NF5400_low_9
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 238 - 585
Target Start/End: Complemental strand, 41132500 - 41132153
Alignment:
| Q |
238 |
acattttaatctataacacatttttcatgcaggtatatttgaatttgcgaagcctagctacaaagaaacagggtggattgaagcactcctcatcattcct |
337 |
Q |
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| T |
41132500 |
acattttaatctataacacatttttcatgcaggtatatttgaatttgcgaagcctagctacaaagaaacagggtggattgaagcactcctcatcattcct |
41132401 |
T |
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| Q |
338 |
taacgaaagcataactacccttcttcacacgattagtggatcagaaaagggcttctatgttgctcacataaacagctatcttggtgatgatccattcttg |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41132400 |
taacgaaagcataactacccttcttcacacgattagtggatcagaaaagggcttctatgttgctcacataaacagctaccttggtgatgatccattcttg |
41132301 |
T |
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| Q |
438 |
agtcaatatcttcctttggatccagctacaaatgatctatttgatctttcaaaagatggcattcttctgtggtatataaccagggtctgctgatttttcg |
537 |
Q |
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| T |
41132300 |
agtcaatatcttcctttggatccagctacaaatgatctatttgatctttcaaaagatggcattcttctgtggtatataaccagggtctgctgatttttcg |
41132201 |
T |
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| Q |
538 |
cattttacttctgtctgtactagcctttaatataataccgggtttgat |
585 |
Q |
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| T |
41132200 |
cattttacttctgtctgtactagcctttaatataataccgggtttgat |
41132153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41132876 - 41132637
Alignment:
| Q |
1 |
ttcgagcgtctggtcacttgtcaatgaaataggatgtgggaaccttgaaactgtaaatcatctcttttttaattatcgaattctctcggtggtgtatagt |
100 |
Q |
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| T |
41132876 |
ttcgagcgtctggtcacttgtcaacgaaataggatgtgggaaccttgaaactgtaaatcatctcttttttaattgtcgaattctctcggtggtgtatagc |
41132777 |
T |
|
| Q |
101 |
gagactttgaaatgattaggaatttcggcagcttttatagaaggcagcttgaacatctgaaccaatttaaagaattagtgaatggtggcaaaaatattag |
200 |
Q |
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| T |
41132776 |
gagactttgaaatgattaggaatttcggcagcttttatagaaggcagcttgaacatctgaaccaatttaaagaattagtgaatggtggcaaaaatattag |
41132677 |
T |
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| Q |
201 |
agaaaagatggttttagtatggctttctaacattgtgaca |
240 |
Q |
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| T |
41132676 |
agaaaagatggttttagtatggctttctaacattgtgaca |
41132637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 29148092 - 29148053
Alignment:
| Q |
35 |
tgtgggaaccttgaaactgtaaatcatctcttttttaatt |
74 |
Q |
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||||| |||||||||||||||||||||| ||||||||||| |
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| T |
29148092 |
tgtggaaaccttgaaactgtaaatcatcacttttttaatt |
29148053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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