View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_93 (Length: 246)
Name: NF5400_low_93
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4296571 - 4296337
Alignment:
| Q |
1 |
tttatgattttttgaacaatcctagaagcgatataaagctttgtgttgatggaagaattgatatggagagaagaatgatcatactgattattgaggacat |
100 |
Q |
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| T |
4296571 |
tttatgattttttgaacaatcctagcagcgatataaagctttgtgttgatggaagaattgatatggagagaagaatgatcatattgattattgaggacat |
4296472 |
T |
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| Q |
101 |
tttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattacacttcttttgggtcaatcagaactaca-----cttaat |
195 |
Q |
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| T |
4296471 |
tttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattagacttcttttgggtcaatcagaactacactcttcttaat |
4296372 |
T |
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| Q |
196 |
taattatgggtactaataagcatgagccacaacat |
230 |
Q |
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| T |
4296371 |
taattatgggtactaataagcatgagccacaacat |
4296337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4303235 - 4303168
Alignment:
| Q |
1 |
tttatgattttttgaacaatcctagaagcgatataaagctttgtgttgatggaagaattgatatggag |
68 |
Q |
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| T |
4303235 |
tttatgattttttgaacaatcctatcggcgatataaagctttgtgttgatggaaaaattgatatggag |
4303168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 4303130 - 4303040
Alignment:
| Q |
120 |
aaatagatgcatatacagtgaatgtagaggtttccagaattacacttcttttg-ggtcaatcagaactacacttaattaattatgggtactaata |
213 |
Q |
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| T |
4303130 |
aaatagacgcatatatagtgaatgtaa--gtaaccaaaattacaattcttttgaggtaaatcagaactacactc--ttaattatgggtactaata |
4303040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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