View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_94 (Length: 245)
Name: NF5400_low_94
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 581268 - 581444
Alignment:
| Q |
62 |
attatattcataatacaagcttcatatcgtataaaagtc-------------gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
148 |
Q |
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| T |
581268 |
attatattcataatacaagcttcatttcgtataaaagtcttagtaaggtcctgtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
581367 |
T |
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| Q |
149 |
tggtatttctttttattattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgccca |
226 |
Q |
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| T |
581368 |
tggtatttctttt-attattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgccca |
581444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 581150 - 581218
Alignment:
| Q |
1 |
tcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattaattatatt |
69 |
Q |
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| T |
581150 |
tcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattacttatatt |
581218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 1201423 - 1201469
Alignment:
| Q |
15 |
caaaaggcaccggttctcgagacacttgttctcaaggttcgtaatta |
61 |
Q |
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| T |
1201423 |
caaaagacaccggttctcaagacactagttctcaaggttcgtaatta |
1201469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 1214868 - 1214906
Alignment:
| Q |
62 |
attatattcataatacaagcttcatatcgtataaaagtc |
100 |
Q |
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| T |
1214868 |
attatattcatgatacaagcttcatatcatataaaagtc |
1214906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 8188784 - 8188730
Alignment:
| Q |
7 |
ccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaatta |
61 |
Q |
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|||||||||||||| | ||||||||| ||||||| ||||| |||||| ||||||| |
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| T |
8188784 |
ccttgcttcaaaagacgccggttctcaagacactagttcttaaggttggtaatta |
8188730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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