View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_96 (Length: 244)
Name: NF5400_low_96
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_96 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 9951827 - 9951608
Alignment:
| Q |
20 |
ccggggtcctgtccaatgcaaacaaaatacaatgtagacataattttcaacttagattaatccacttagttagaaagtaaaaaataaacaatgctactag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9951827 |
ccggggtcctgtccaatgcaaacaaaatacaatgtagacataattttcaacttagattaatccacttagtttgaaagtaaaaaataaacaatgctactag |
9951728 |
T |
|
| Q |
120 |
aaaaaaccgtaacacatgaaatatcaattatgtgttcaaattnnnnnnnnnnnnntaaatgtatcgtgaaaaatcaattatttttggtgtcatatataat |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9951727 |
aaaaaacagtaacacatgaaatatcaattatgtgttcaaatt--cacacacacactaaatgtatcgtgaaaaatcaattatttttggtttcatatataat |
9951630 |
T |
|
| Q |
220 |
aacatgctacttatatgaaaaa |
241 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9951629 |
aacatgctacttatatgaaaaa |
9951608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University