View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5401-Insertion-2 (Length: 1120)
Name: NF5401-Insertion-2
Description: NF5401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5401-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 804; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 8 - 954
Target Start/End: Complemental strand, 44011904 - 44010970
Alignment:
| Q |
8 |
attttaactatatattatacagtataatatattagtctaaggttagttgcttttgctattcatttattttccatgttctaattgttcttgaaaatttgca |
107 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011904 |
attttaactatatattatatagtacaatatattagtctaaggttagttgcttttgctattcatttattttccatgttctaattgttcttgaaaatttgca |
44011805 |
T |
|
| Q |
108 |
acagagtttgagaaaaccaaaactattctgggcttcagcagctgctcctttaacatcagtcattctttcaaccatcttagtcttccttcttagaaataag |
207 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011804 |
acagagtttgaggaaaccaaaactattctgggcttcagcagctgctcctttaacatcagtcattctttcaaccatcttagtcttccttcttagaaataag |
44011705 |
T |
|
| Q |
208 |
gctcatcacatttcagttgtaagaattttacttacttcatcattactattttgagtatatcacaaatagtatcattttaataatatcnnnnnnnttgaaa |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44011704 |
gctcatcacatttcagttgtaagaattttacttacttcatcattactattttgagtatatcacaaatagtatcattttaataatatcaaaaaaattgaaa |
44011605 |
T |
|
| Q |
308 |
tattgttcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagta |
407 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011604 |
tattggtcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagta |
44011505 |
T |
|
| Q |
408 |
aacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgct |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011504 |
aacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgct |
44011405 |
T |
|
| Q |
508 |
acacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011404 |
acacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatt |
44011305 |
T |
|
| Q |
608 |
tgtcacgcggtttaaatttttcaattaaatttaaacttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataaca |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011304 |
tgtcacgcggtttaaatttttcaattaaatttaaacttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataaca |
44011205 |
T |
|
| Q |
708 |
gtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaaaatttaccaat |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44011204 |
gtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaacatttaccaat |
44011105 |
T |
|
| Q |
808 |
gtttcaggaagggaatttgcagtaggtagaacattttgcagcactttaagaaattaccaagtgggatgggaaacaagaaatgatgggctattgggtatta |
907 |
Q |
| |
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|||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||| |||||| || |||||||||| ||||||| ||||||| |
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| T |
44011104 |
gtttcaggaagg--aattgcagtaggtagaaca-tttgcagcac-ttaag-aattaccaagt-ggatggaaacaaagaaatgat-ggctatt-ggtatta |
44011013 |
T |
|
| Q |
908 |
tgaacaatagctggaattcttggtacttcatgctatgtcacaacagg |
954 |
Q |
| |
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||||| ||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
44011012 |
tgaac-atagctgga--tctt-gtacttcatgctatgtcacaacagg |
44010970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 3175753 - 3175862
Alignment:
| Q |
382 |
caaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctct |
481 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||||| |||||| | |||||||||||||||||||| || ||||||| |||||| | ||||| |
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|
| T |
3175753 |
caaagggacttaatccaccatcatcaaacatgttatacttcagtggtccacatttggctcttgctatcaaaactggacttgtcactggaatcttgtctct |
3175852 |
T |
|
| Q |
482 |
cacagtaagc |
491 |
Q |
| |
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||| |||||| |
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| T |
3175853 |
cactgtaagc |
3175862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 314 - 420
Target Start/End: Complemental strand, 22377110 - 22377006
Alignment:
| Q |
314 |
tcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctg |
413 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | ||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| || |
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| T |
22377110 |
tcaaattaatcaaaagcagtaataattgattgattat--gtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatg |
22377013 |
T |
|
| Q |
414 |
ttatact |
420 |
Q |
| |
|
||||||| |
|
|
| T |
22377012 |
ttatact |
22377006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 314 - 420
Target Start/End: Original strand, 30733915 - 30734019
Alignment:
| Q |
314 |
tcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctg |
413 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | ||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| || |
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| T |
30733915 |
tcaaattaatcaaaagcagtaataattgattgattat--gtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatg |
30734012 |
T |
|
| Q |
414 |
ttatact |
420 |
Q |
| |
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||||||| |
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|
| T |
30734013 |
ttatact |
30734019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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