View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5401_low_1 (Length: 420)
Name: NF5401_low_1
Description: NF5401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5401_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 35979901 - 35980296
Alignment:
| Q |
9 |
gataatactgatgtcttgcacaggtggacttcatatgtatgctgctttttcttcctctatcnnnnnnnntcaagcagaacaatcaactcatgaatcagac |
108 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
35979901 |
gataatattgatgtcttgcacaggtggacttcatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagaacaatcaactgatgaatcagac |
35980000 |
T |
|
| Q |
109 |
attgttagatccaaacagaaactcatccttgaaggtatgttaatttcttcatcttcaacaagaaacacatgctactcatcaatcacttttttgaatcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35980001 |
attgttagatccaaacagaaactcatccttgaaggtatgttaatttcttcatcttcaa-aagaaacacatgctactcatcaatcacttttttgaatcatt |
35980099 |
T |
|
| Q |
209 |
tcaaaatattttacttttatcaaaggtgtaatatactaaccatttaagcatgttaatgacattgtgtttattctaacagatgaacttttggataaggaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35980100 |
tcaaaatattttacttttatcaaaggtgtaatatactaaccatttaagcatgttaatgacattgtgtttattctaacagatgaacttttggataaggaga |
35980199 |
T |
|
| Q |
309 |
tattacctactgatatcaaagttaacaatggcatgcacagtgaattttttccagttccagctaagnnnnnnntgaagatgagtaacagaggctcttc |
405 |
Q |
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| T |
35980200 |
tattacctactgatatcaaagttaacaatggcatgcacagtgaattttttccagttccagctaataaaaaaatgaagatgagtaacagaggctcttc |
35980296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 35969791 - 35969989
Alignment:
| Q |
9 |
gataatactgatgtcttgcacaggtggacttcatatgtatgctgctttttcttcctctatcnnnnnnnntcaagcagaacaatcaactcatgaatcagac |
108 |
Q |
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| T |
35969791 |
gataatattgatgtcttgcacaggtagacttaatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagagcaatcaactcatgaatcagac |
35969890 |
T |
|
| Q |
109 |
attgttagatccaaacagaaactcatccttgaaggtatgttaatttcttcatcttcaacaagaaacacatgctactcatcaatcacttttttgaatcat |
207 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||||||||||| |
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| T |
35969891 |
attgttagatccaagcagaaactcaaccttgaaggtatgttaatttcttcatcttcgaccagaaacatatcttactcatcaatcacttttttgaatcat |
35969989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 79 - 372
Target Start/End: Original strand, 35956856 - 35957154
Alignment:
| Q |
79 |
caagcagaacaatcaactcatgaatcagacattgttagatccaaacagaaactca------tccttgaaggtatgttaatttcttcatcttcaacaagaa |
172 |
Q |
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| T |
35956856 |
caagcagtaaaatcaactcatgaatcacacattgttaaatctaaaccgaaactcaaacctgtccctgaaggtatgtaaatttcttcatcttcatccaata |
35956955 |
T |
|
| Q |
173 |
acacatgctac---tcatcaatcacttttttgaatcatt-tcaaaatattttacttttatcaaaggtgtaatatactaaccatttaagcatgttaatgac |
268 |
Q |
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||| || ||| | ||||| ||||||||| || ||| | ||| || ||||||||| ||||||||||||||| || |||||| || |||||| ||||| |
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| T |
35956956 |
acatatcttaccaattatcaaacacttttttaaaccatcgtgaaactagtttacttttttcaaaggtgtaatatgctgaccattgaa-catgtttatgac |
35957054 |
T |
|
| Q |
269 |
attgtgtttattctaacagatgaacttttggataaggagatattacctactgatatcaaagttaacaatggcatgcacagtgaattttttccagttccag |
368 |
Q |
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|||||||| |||||||||||||||||| || | |||||||||||||||||| || |||||||||||||||| || | ||||| ||| ||| ||||| |
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| T |
35957055 |
attgtgtt----ctaacagatgaacttttgtatgacgagatattacctactgatttccaagttaacaatggcatacaaaatgaatctttaccacttccac |
35957150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 361
Target Start/End: Original strand, 35974771 - 35975036
Alignment:
| Q |
101 |
aatcagacattgttagatccaaacagaaactca------tccttgaaggtatgttaatttcttcatcttcaacaagaaacacatg---ctactcatcaat |
191 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||| ||| |||||||||||||||||||||||||||| | | |||| || ||| | |||||| |
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| T |
35974771 |
aatcagacattgttaaatctaaactgaaactcaaccctgtccctgaaggtatgttaatttcttcatcttcatccaataacatatctgactaattatcaat |
35974870 |
T |
|
| Q |
192 |
cacttttttgaatcatttcaaaa-tattttacttttatcaaaggtgtaatatactaaccatttaagcatgttaatgacattgtgtttattctaacagatg |
290 |
Q |
| |
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||| ||||| || ||| |||| || ||||||||| ||||||||||||||| | |||||| || |||||| || ||| ||||||| ||||||||| |
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| T |
35974871 |
cacatttttaaaccatcgtaaaactagtttacttttttcaaaggtgtaatatgccgaccattgaa-catgtttataacaatgtgttt----taacagatg |
35974965 |
T |
|
| Q |
291 |
aacttttggataaggagatattacctactgatatcaaagttaacaatggcatgcacagtgaattttttcca |
361 |
Q |
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| T |
35974966 |
aacttttgaaccaggagatattatctactgatttcaaagttaaaaatggcatacacaatgaatcttttcca |
35975036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 35972763 - 35972868
Alignment:
| Q |
28 |
acaggtggacttcatatgtatgctgctttttcttcctctatcnnnnnnnntcaagcagaacaatcaactcatgaatcagacattgttagatccaaacaga |
127 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||| || ||| |||| |
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| T |
35972763 |
acaggtggacttgatatgtatgctgcgttttcttcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagacattgttaaatacaagcaga |
35972862 |
T |
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| Q |
128 |
aactca |
133 |
Q |
| |
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||||| |
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| T |
35972863 |
tactca |
35972868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 35953036 - 35953145
Alignment:
| Q |
260 |
gttaatgacattgtgtttattctaacagatgaacttttggataaggagatattacctac---tgatatcaaagttaacaatggcatgcacagtgaatttt |
356 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| ||||||| |||||| ||||||||| |||| ||||||||||| ||| |||||||| ||||| || |
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| T |
35953036 |
gttaatgacattgtgtttattccaccagataaacgtttggatcaggagaaattacctactgatgatgtcaaagttaacgatgacatgcacactgaatctt |
35953135 |
T |
|
| Q |
357 |
ttccagttcc |
366 |
Q |
| |
|
| ||| |||| |
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|
| T |
35953136 |
taccaattcc |
35953145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 35969987 - 35970096
Alignment:
| Q |
257 |
catgttaatgacattgtgtttattctaacagatgaactt------ttggataaggagatattacctactgatatcaaagttaacaatggcatgcacagtg |
350 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| |||| |||||||| || |
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| T |
35969987 |
catgttaatgacattgcgtttattctaacagttgaacttgaacttttttataaggagatattacctactgat-gcaaagttaataatgacatgcacaatg |
35970085 |
T |
|
| Q |
351 |
aattttttcca |
361 |
Q |
| |
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||| ||||||| |
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|
| T |
35970086 |
aatcttttcca |
35970096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35952800 - 35952844
Alignment:
| Q |
20 |
tgtcttgcacaggtggacttcatatgtatgctgctttttcttcct |
64 |
Q |
| |
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|||||||||||||||||||| |||||||||| | ||||||||||| |
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|
| T |
35952800 |
tgtcttgcacaggtggacttgatatgtatgcggatttttcttcct |
35952844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 361
Target Start/End: Complemental strand, 9296979 - 9296854
Alignment:
| Q |
229 |
caaaggtgtaatatactaaccatttaagcatgttaatgacattgtgtttattctaacagatgaacttttggataaggagatattacctactgatatcaaa |
328 |
Q |
| |
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|||||||||||||| || |||||| ||||||| ||| ||||||||| |||||| ||| |||||||||| | ||||| ||||||||||| ||||| |
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| T |
9296979 |
caaaggtgtaatatgcttaccattcg-gcatgtttatggcattgtgtt----ctaacatatggacttttggatcatgagat--tacctactgatgtcaaa |
9296887 |
T |
|
| Q |
329 |
gttaacaatggcatgcacagtgaattttttcca |
361 |
Q |
| |
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|||||| ||||| ||||| ||||| ||||||| |
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| T |
9296886 |
gttaacgatggctagcacaatgaatcttttcca |
9296854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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