View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5402-Insertion-1 (Length: 89)

Name: NF5402-Insertion-1
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5402-Insertion-1
NF5402-Insertion-1
[»] chr8 (3 HSPs)
chr8 (9-89)||(15169241-15169319)
chr8 (25-89)||(15076372-15076434)
chr8 (10-89)||(15172062-15172139)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 15169319 - 15169241
Alignment:
Q  9 taagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtccc-aaatttatatttgtttcaatgtttttggtgt 89  Q
    |||||||||||||||||||||||||||||||||||  |||  |||||||| ||||||||||   ||||||||||||||||||    
T  15169319 taagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatttatat---tttcaatgtttttggtgt 15169241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 15076372 - 15076434
Alignment:
Q  25 tcacttcctaaagaaaatgggtggggattgtccc-aaatttatatttgtttcaatgtttttggtgt 89  Q
    |||||||||||||||||||||||||||||||||| |||| |||||   ||||||||||||||||||    
T  15076372 tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatat---tttcaatgtttttggtgt 15076434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 15172139 - 15172062
Alignment:
Q  10 aagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtccc-aaatttatatttgtttcaatgtttttggtgt 89  Q
    ||||||||||||||||||||||||||||||||||  |||  |||||||| |||| |||||   ||||||||||||||||||    
T  15172139 aagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatgtatat---tttcaatgtttttggtgt 15172062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University