View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402-Insertion-2 (Length: 697)
Name: NF5402-Insertion-2
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 313 - 697
Target Start/End: Complemental strand, 36586616 - 36586226
Alignment:
| Q |
313 |
ttcttttttaaaagtgaaatgtttgaatgaacgacgagtttgtcaaaattacaatgacacatgtgattttacggaagttctaaaatgtaacttttatcac |
412 |
Q |
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| T |
36586616 |
ttcttttttaaaagtgaaatgtttgaatgaacgacgagtttgtcaaaattacaatgacacatgtgattttacagaaattctaaagtgtaacttttgtcac |
36586517 |
T |
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| Q |
413 |
aattgcgatgacttcgagtgatacaacgatctaattggcaatccaaacatattttaaatccactttccctcataaggggaataaaaaaggagaggttttg |
512 |
Q |
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| T |
36586516 |
aattgcgatgacttggagtgatacaacgatctaatcggcaatccaaacatattttaaatccactttccctcttaaggggaataaaaaaggagaggttttg |
36586417 |
T |
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| Q |
513 |
attggtgcttaaagatttattgatagggtatggg------aaagagaaagagatagaggagataaagacaccttcatttacggaacaagtgaaagcaaaa |
606 |
Q |
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| T |
36586416 |
attggtgcttaaagatttattgatagggtatgggaaagggaaagagaaagagatagaggagataaagacaccttcatttacggagcaagtgaaagcaaaa |
36586317 |
T |
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| Q |
607 |
aagagggtaaaaaggggtacatccactcatgaacccagaacattggattggacagagtggctaagaaaggaaattgaaagcaaattttgta |
697 |
Q |
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| T |
36586316 |
aagagggtaaaaaggggtacatccactcatgaacccagaacattggattggacagagtggctaagaaaggaaattgaaagcaaattttgta |
36586226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 36586720 - 36586616
Alignment:
| Q |
34 |
attcccatctatcccttgtattgtaataattccaagatctaatggcttagcttcattcgctataccttcgtgagaggtttggttcgctttatatagcact |
133 |
Q |
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| T |
36586720 |
attcccatctatcccttgtattgtaataattccaagatctaatggcttagcttcattcgctataccttcgtgagaggtttggttcgctttatatagcact |
36586621 |
T |
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| Q |
134 |
tccct |
138 |
Q |
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||||| |
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| T |
36586620 |
tccct |
36586616 |
T |
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