View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5402-Insertion-3 (Length: 536)
Name: NF5402-Insertion-3
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402-Insertion-3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 54619098 - 54618568
Alignment:
| Q |
8 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattggttgttgtaggaggcgactggggtgcgagggctatcgctttca |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
54619098 |
gaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattggttgttgtaggaggcgactggggtgcgaggg---tcgctgtca |
54619002 |
T |
|
| Q |
108 |
cggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggccggtttgcgtaaacaaaaattgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54619001 |
cggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggccggtttgcgtaaacaaagattgt |
54618902 |
T |
|
| Q |
208 |
gttcattgtattgcgatttatgattcttttattcnnnnnnnnnnn-----actaatgattcttttatcattttgttactagttgttcttacagattataa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618901 |
gttcattgtattgcgatttatgattcttttattcttttttctttttttttactaatgattcttttatcattttgttactagttgttcttacagattataa |
54618802 |
T |
|
| Q |
303 |
nnnnnnngtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagacccatttaagaatataatttatgttttttatacg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
54618801 |
tttttttgtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagatccatttaaggatataatttatgttttttatacg |
54618702 |
T |
|
| Q |
403 |
catcggtcgggaatcgaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttactagt |
502 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618701 |
catcggtcgggaatcaaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttactagt |
54618602 |
T |
|
| Q |
503 |
taagctacacaaagattgtgttaataaatatcga |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54618601 |
taagctacacaaagattgtgttaataaatatcga |
54618568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 13951061 - 13951107
Alignment:
| Q |
10 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
56 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
13951107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 3201 - 3247
Alignment:
| Q |
10 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
56 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
3247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 39129296 - 39129349
Alignment:
| Q |
8 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaa |
61 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
39129296 |
gaagctccctccacccatgcccttgtgtttgggtcaaacgtgtgttaggcccaa |
39129349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 6938293 - 6938345
Alignment:
| Q |
12 |
ctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattg |
64 |
Q |
| |
|
||||||| || |||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
6938293 |
ctccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
6938345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University