View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402-Insertion-5 (Length: 541)
Name: NF5402-Insertion-5
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Complemental strand, 10560817 - 10560277
Alignment:
| Q |
7 |
aggtaaatgggttgcctcacttatatgttgttcaacgtctacgtttccatccaatttctaattcacacttgacacaccaacaagatatgccttggtgtag |
106 |
Q |
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| T |
10560817 |
aggtaaatgggttgcctcacttatatgttgttcaacgtctacgtttccatccaatttctaattcacacttgacacaccaacaagatatgcctcggt--ag |
10560720 |
T |
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| Q |
107 |
ttgttact-------cttga-gacataaagtataagtagtttaattcaaaatggctacaatcacaaattttgttcttatcaattttgcttaacatttaaa |
198 |
Q |
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| T |
10560719 |
ttgttactaaagtagctagttgacataaagtataagtagtttaattcaaaatggctacaatcacaaattttgttcttatcaattttgcttaacatttaaa |
10560620 |
T |
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| Q |
199 |
ctatgaaatcatgcaaagataacagagaacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatacaatgaagtataaacca |
298 |
Q |
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| T |
10560619 |
ctatgaaatcatgcaaagataacagagaacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatataatgaagtataaacca |
10560520 |
T |
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| Q |
299 |
aatcataattcaaagctttgactgttccacagagtgaaatatggcaattttaataaggtaacaaccaatatgtgtgagccgagaaagtcttaacataatt |
398 |
Q |
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| T |
10560519 |
aatcataattcaaagctttgactgttccacagagtgaaatatggcaacattaataaggtaacaaccaatatgtgtgagccgagaaagtcttaacataatt |
10560420 |
T |
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| Q |
399 |
gaaatgaaatcctaacgcctgcggttcagacctacagatttataaccctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaat |
498 |
Q |
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| T |
10560419 |
gaaatgaaatcctaacgcctgcggttcagacctacagatttataaccctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaat |
10560320 |
T |
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| Q |
499 |
cagaacagcggcgctatgcttcctcttttagtgcctgccaact |
541 |
Q |
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| T |
10560319 |
cagaacagcggctctatgcttcctcttttagtgcctgccaact |
10560277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 226 - 336
Target Start/End: Complemental strand, 10559613 - 10559509
Alignment:
| Q |
226 |
aacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatacaatgaagtataaaccaaatcataattcaaagctttgactgttc |
325 |
Q |
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| T |
10559613 |
aacttaggtaacacaggacataatttagaacaataaactatcatcaacc------acaatgaagtatgaaccaaatcaaaattcaaagctttgacagttc |
10559520 |
T |
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| Q |
326 |
cacagagtgaa |
336 |
Q |
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| T |
10559519 |
cacagggtgaa |
10559509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 446 - 535
Target Start/End: Complemental strand, 10558273 - 10558183
Alignment:
| Q |
446 |
ctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggcgc-tatgcttcctcttttagtgcctg |
535 |
Q |
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| T |
10558273 |
ctgagctcatacagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctg |
10558183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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