View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402_high_1 (Length: 520)
Name: NF5402_high_1
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 36 - 510
Target Start/End: Original strand, 49635618 - 49636090
Alignment:
| Q |
36 |
cttcctatccaaaatatatatctaaaatcatttacggtatatttctagcttcaaatgtaacatgaaacttaacattgacatttgaacctctacttacgtg |
135 |
Q |
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| T |
49635618 |
cttcctatccaaaatatatatctaaaatcatttacggtatatttctagcttcaaatgtaacatgaaacttaacattgacatttgaacctctacttacgtg |
49635717 |
T |
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| Q |
136 |
acattttcttctttctcaaacggcgaaatctattcacatctttttctttgaataagctatcgaaattatcatttt-gtttgaatttggttcgtcaatcat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49635718 |
acattttcttctttctcaaacggcgaaatctattcacatctttttctttgaataagctatcgaaattatcatttttgtttgaatttggttcgtcaatcat |
49635817 |
T |
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| Q |
235 |
acaaacataattactattctctaatgcattttgaatccattaaaatagtctatcagccatcattctatttcaatttttaaagaaaattgttagattaact |
334 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49635818 |
acaaacataattactattctctaa---attttgaatccattaaaatagtctatcagccatcattctatttcaatttttaaagaaaattgttagattaact |
49635914 |
T |
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| Q |
335 |
atatatagtttaataccacttattattgttgcaaaaaggaccgattgtgatcgaagctcaaactctagcttctccatgtgagttttgggatgattgtgat |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49635915 |
atatatagtttaataccacttattattgttgcaaaaaggaccgattgtgatcgaagctcaaactctagcttctccatgtgagttttgggatgattgtgat |
49636014 |
T |
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| Q |
435 |
cgggggagtgggatatgtgaagaaggggacgtgagagtcttcatctcttaatggcatatggtttacactacctttg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49636015 |
cgggggagtgggatatgtgaagaaggggacgtgagagtcttcatctcttaatggcatatggtttacactacctttg |
49636090 |
T |
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