View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5402_high_4 (Length: 408)
Name: NF5402_high_4
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 44852345 - 44852719
Alignment:
| Q |
17 |
cagatgaaaccgtgtcgtgttgactgggtgagtgtagaaatccttaaccgcaggggatttgttgtattagtaagggtttaaaaataaatcaagtttgaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852345 |
cagatgaaaccgtgtcgtgttgactgggtgagtgtagaaatctttaaccgcaggggatttgttgtattagtaagggtttaaaaataaatcaagtttgaat |
44852444 |
T |
|
| Q |
117 |
gtaactcaaaatccaagctaagcacatacacttcacaaatttttcaatttactccaaatagaaagtgcgaatctaaaacatgaattttttaacaaaaatg |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44852445 |
gtaactcaaaatccaagctgagcacatacacttcacaaatttttcaatttactccaaatagaaagtgcgaatctaaaacatgatttttttaacaaaaatg |
44852544 |
T |
|
| Q |
217 |
taaaccatgtattgnnnnnnnnnnnnnnctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatctt |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852545 |
taaaccatgtattgtttgtcatttttttctacttctgttgttttgtcatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatctt |
44852644 |
T |
|
| Q |
317 |
ctgatcacgagaaggatgtcgagaacatggtacaacggctcaccccaaatgccaacaagatataccatctctctg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852645 |
ctgatcacgagaaggatgtcgagaacatggtacaacggctcaccccaaatgccaacaagatataccatctctctg |
44852719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 44884752 - 44884898
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44884752 |
ctacttctgttgttttatcatagctgaaaggcagatatggaggaacttatgtgttcacaatgacaacatcttccgatcacgagaaggatgtcgagaacat |
44884851 |
T |
|
| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctctctg |
391 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884852 |
ggtacaacgtctcaccccaaatgccaacaagatataccatctctctg |
44884898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 44841242 - 44841381
Alignment:
| Q |
252 |
tgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacatggtacaa |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
44841242 |
tgttgttttgtcatagctgaaaggcagatatggaggaacttatttgttcacaatgacaacatcttccgatcacgagaaggatgtcgagaacattgtacaa |
44841341 |
T |
|
| Q |
352 |
cggctcaccccaaatgccaacaagatataccatctctctg |
391 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841342 |
cgcctcaccccaaatgccaacaagatataccatctctctg |
44841381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 44867016 - 44867162
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44867016 |
ctacttctgttgttttgtcatagctgaaaggaagatatggaggaacttatgtgttcacaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
44867115 |
T |
|
| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctctctg |
391 |
Q |
| |
|
| ||| || ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
44867116 |
gatacggcgtctcaccccaaatgccaacaggatataccgtctctctg |
44867162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 44901709 - 44901855
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||| |||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
44901709 |
ctacttttgttgttttgtcatagctgaaagccaggtatggagggatttatgtgttcacaatgacaacatcttccgatcacgagaaggatgtggagaacat |
44901808 |
T |
|
| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctctctg |
391 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44901809 |
tgtgcaacagctcaccccaaatgccaacaagatataccatctctctg |
44901855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 12923151 - 12923026
Alignment:
| Q |
264 |
atagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacatggtacaacggctcacccca |
363 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||| ||||| |||||||| |||||| || | |||||||||| |||| |||| ||| ||||| |
|
|
| T |
12923151 |
atagctgaaaggaagatatggaggaacttatgtattctcaatggcaacatctattgatcatgaatcgaatgtcgagaaattggtgcaacaactctcccca |
12923052 |
T |
|
| Q |
364 |
aatgccaacaagatataccatctctc |
389 |
Q |
| |
|
||||| || ||||| |||||| |||| |
|
|
| T |
12923051 |
aatgctaagaagatttaccatatctc |
12923026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University