View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402_high_6 (Length: 391)
Name: NF5402_high_6
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 32812875 - 32812512
Alignment:
| Q |
10 |
catcatcaccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatgg |
109 |
Q |
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| T |
32812875 |
catcatcaccaccttcaactccgtgaaaagaagggaacaatagtataatatccttcttatgataaaccactggacaacaatacttaggcttcccccatgg |
32812776 |
T |
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| Q |
110 |
atactccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagacctt |
209 |
Q |
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| T |
32812775 |
atactccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagacctt |
32812676 |
T |
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| Q |
210 |
gcatactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcgtacg |
309 |
Q |
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| T |
32812675 |
gcatactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcttacg |
32812576 |
T |
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| Q |
310 |
ccgttaaaactgcattcccagcgtactctctcggcaatggaggattcaatcttgaacgtatgtc |
373 |
Q |
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| T |
32812575 |
ccgttaaaactgcattcccagcgtactctctcggcaatggaggattcaatcttgaacgtatgtc |
32812512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 32830399 - 32830045
Alignment:
| Q |
16 |
caccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggatactc |
115 |
Q |
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| T |
32830399 |
caccaccttcacctccattaaaagaaggaaataatagtataatatccttcctatgataaaccacaggacaacaatacttaggcttcccccatggatactc |
32830300 |
T |
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| Q |
116 |
cacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatac |
215 |
Q |
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| T |
32830299 |
cacctcttcaaaccctagcctccaccatgaagacaccaaaacatccccatttggaaaaccattatacaactctccccaatcaataatagatcttgcatat |
32830200 |
T |
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| Q |
216 |
tcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcgtacgccgtta |
315 |
Q |
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||||||| ||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32830199 |
tcatcactcattcttcttgaaccctcttccaccatctccaccaaccttgaaaattcaccttccttcaattcctcacactttgccgaagcgtacgctgtta |
32830100 |
T |
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| Q |
316 |
aaactgcattcccagcgtactctctcggcaatggaggattcaatcttgaacgtat |
370 |
Q |
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| T |
32830099 |
atactgcattcccagtgtacgctctcggcaatggaggattcaatcttgaacgtat |
32830045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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