View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402_low_13 (Length: 209)
Name: NF5402_low_13
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 41900517 - 41900441
Alignment:
| Q |
10 |
catcatcacaacctaagcatgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaag |
86 |
Q |
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| T |
41900517 |
catcaccacaacctaagtatgtctataagtctcctcctccaccatctgcatcactacccctttcttacatctacaag |
41900441 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 41900307 - 41900249
Alignment:
| Q |
28 |
atgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaag |
86 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41900307 |
atgtctacaagtctcctcctccaccatctgcatcactacccctttcttacatctacaag |
41900249 |
T |
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