View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5402_low_2 (Length: 455)
Name: NF5402_low_2
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 41575156 - 41574949
Alignment:
| Q |
13 |
gacatcatcattggatgaggcataaggaaaaatgcgacgaggtcaaacgggcttcacaactaattttagactataatgcgaccatcactttcacagtcga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41575156 |
gacatcatcattggatgaggcataaggaaaaatgtgacgaggccaaacgggcttcacaactaattttagactataatgcgaccatcactttcacagtcga |
41575057 |
T |
|
| Q |
113 |
cttaaatggtcgtgctaactttagcagcgtgcagaaagcgattgatgccgttcctgaatctagttttaatacaacccttattataatcaattccggtaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41575056 |
cttaaatggtcgtgctaactttagcagcgtgcagaaagcgattgatgccgttcctgaatctagttttaatacaacccttattataatcaattctggtaca |
41574957 |
T |
|
| Q |
213 |
tacaggtt |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
41574956 |
tacaggtt |
41574949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 293 - 436
Target Start/End: Complemental strand, 41574876 - 41574733
Alignment:
| Q |
293 |
attcaatagaattccatcaatatttaacaaaaaacacataactaactactaactagtgttttcaattgtatataccgaggtacaccatccatgtttaata |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41574876 |
attcaatagaattccatcaatatttaacaaaaaacacataactaactactaactagtgttttcaattgtatataccgaggtacaccgtccatgtttaata |
41574777 |
T |
|
| Q |
393 |
attatgaatttaagaattatatgtttaaagtttactgaccttta |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41574776 |
attatgaatttaagaattatatgtttaaagtttactgaccttta |
41574733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University