View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402_low_5 (Length: 400)
Name: NF5402_low_5
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 44852345 - 44852715
Alignment:
| Q |
17 |
cagatgaaaccgtgtcgtgttgactgggtgagtgtagaaatccttaaccgcaggggatttgttgtattagtaagggtttaaaaataaatcaagtttgaat |
116 |
Q |
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| T |
44852345 |
cagatgaaaccgtgtcgtgttgactgggtgagtgtagaaatctttaaccgcaggggatttgttgtattagtaagggtttaaaaataaatcaagtttgaat |
44852444 |
T |
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| Q |
117 |
gtaactcaaaatccaagctaagcacatacacttcacaaatttttcaatttactccaaatagaaagtgcgaatctaaaacatgaattttttaacaaaaatg |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44852445 |
gtaactcaaaatccaagctgagcacatacacttcacaaatttttcaatttactccaaatagaaagtgcgaatctaaaacatgatttttttaacaaaaatg |
44852544 |
T |
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| Q |
217 |
taaaccatgtattgnnnnnnnnnnnnnnctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatctt |
316 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852545 |
taaaccatgtattgtttgtcatttttttctacttctgttgttttgtcatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatctt |
44852644 |
T |
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| Q |
317 |
ctgatcacgagaaggatgtcgagaacatggtacaacggctcaccccaaatgccaacaagatataccatctc |
387 |
Q |
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| T |
44852645 |
ctgatcacgagaaggatgtcgagaacatggtacaacggctcaccccaaatgccaacaagatataccatctc |
44852715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 44884752 - 44884894
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
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| T |
44884752 |
ctacttctgttgttttatcatagctgaaaggcagatatggaggaacttatgtgttcacaatgacaacatcttccgatcacgagaaggatgtcgagaacat |
44884851 |
T |
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| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctc |
387 |
Q |
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| T |
44884852 |
ggtacaacgtctcaccccaaatgccaacaagatataccatctc |
44884894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 252 - 387
Target Start/End: Original strand, 44841242 - 44841377
Alignment:
| Q |
252 |
tgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacatggtacaa |
351 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
44841242 |
tgttgttttgtcatagctgaaaggcagatatggaggaacttatttgttcacaatgacaacatcttccgatcacgagaaggatgtcgagaacattgtacaa |
44841341 |
T |
|
| Q |
352 |
cggctcaccccaaatgccaacaagatataccatctc |
387 |
Q |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
44841342 |
cgcctcaccccaaatgccaacaagatataccatctc |
44841377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 44867016 - 44867158
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44867016 |
ctacttctgttgttttgtcatagctgaaaggaagatatggaggaacttatgtgttcacaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
44867115 |
T |
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| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctc |
387 |
Q |
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| ||| || ||||||||||||||||||| |||||||| |||| |
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| T |
44867116 |
gatacggcgtctcaccccaaatgccaacaggatataccgtctc |
44867158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 44901709 - 44901851
Alignment:
| Q |
245 |
ctacttctgttgttttgttatagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacat |
344 |
Q |
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|||||| ||||||||||| ||||||||||| ||| |||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
44901709 |
ctacttttgttgttttgtcatagctgaaagccaggtatggagggatttatgtgttcacaatgacaacatcttccgatcacgagaaggatgtggagaacat |
44901808 |
T |
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| Q |
345 |
ggtacaacggctcaccccaaatgccaacaagatataccatctc |
387 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||| |
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| T |
44901809 |
tgtgcaacagctcaccccaaatgccaacaagatataccatctc |
44901851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 12923151 - 12923031
Alignment:
| Q |
264 |
atagctgaaaggcagatatggaggaacatatgtgttcgcaatgacaacatcttctgatcacgagaaggatgtcgagaacatggtacaacggctcacccca |
363 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| ||| ||||| |||||||| |||||| || | |||||||||| |||| |||| ||| ||||| |
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| T |
12923151 |
atagctgaaaggaagatatggaggaacttatgtattctcaatggcaacatctattgatcatgaatcgaatgtcgagaaattggtgcaacaactctcccca |
12923052 |
T |
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| Q |
364 |
aatgccaacaagatataccat |
384 |
Q |
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||||| || ||||| |||||| |
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| T |
12923051 |
aatgctaagaagatttaccat |
12923031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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