View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5402_low_7 (Length: 347)

Name: NF5402_low_7
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5402_low_7
NF5402_low_7
[»] chr8 (2 HSPs)
chr8 (266-328)||(42486735-42486797)
chr8 (267-328)||(42489177-42489238)
[»] chr1 (4 HSPs)
chr1 (266-328)||(38617268-38617330)
chr1 (267-328)||(38614784-38614845)
chr1 (267-328)||(40805934-40805995)
chr1 (267-328)||(40808425-40808486)
[»] chr5 (1 HSPs)
chr5 (267-328)||(41663282-41663343)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 42486735 - 42486797
Alignment:
Q  266 tgagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  42486735 tgagttcagatcctctccatttggagggtaaatggccatctccctttactttcatatccaact 42486797  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 42489238 - 42489177
Alignment:
Q  267 gagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||    
T  42489238 gagttcagatcctcttcatttggagagtaaatggtcatcttcctttactttcatatccaact 42489177  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 38617330 - 38617268
Alignment:
Q  266 tgagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  38617330 tgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaact 38617268  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 38614784 - 38614845
Alignment:
Q  267 gagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  38614784 gagttcagatcctcttcatttggagggtaaatggccatctccctttactttcatatccaact 38614845  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 40805934 - 40805995
Alignment:
Q  267 gagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  40805934 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaact 40805995  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 40808486 - 40808425
Alignment:
Q  267 gagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  40808486 gagttcagatcctctccatttggagggtaaatgaccatctccctttactttcatatccaact 40808425  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 41663343 - 41663282
Alignment:
Q  267 gagttcagatcctctccatttggagggtaaatggccatcttcccttactttcatatccaact 328  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  41663343 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaact 41663282  T

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