View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5402_low_8 (Length: 290)
Name: NF5402_low_8
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 15051906 - 15052104
Alignment:
| Q |
13 |
attatatatctatcccagctggtataacatttt--ttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaa |
110 |
Q |
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| T |
15051906 |
attatatatctctcccagctggtataacattttttttaataccattagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaa |
15052005 |
T |
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| Q |
111 |
attattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttc |
209 |
Q |
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| T |
15052006 |
attattgaatgaatactggtatcgtgctataaataatagctggttattaacacaattttcaagataacgaaaattgcaactagtgttgtgttctccttc |
15052104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 15066120 - 15066371
Alignment:
| Q |
12 |
gattatatatctatcccagctggtataacattttttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaaa |
111 |
Q |
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| T |
15066120 |
gattatatatctatcccagctggtataacattttttaataccactagatcacaaggttccatttc--------ttaaataaaatcctaaactaattaaaa |
15066211 |
T |
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| Q |
112 |
ttattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctcct---- |
207 |
Q |
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| T |
15066212 |
ttattgaatgagtactggcatcgtgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaa |
15066311 |
T |
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| Q |
208 |
-------------tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
254 |
Q |
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| T |
15066312 |
tggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15066371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 15076155 - 15076324
Alignment:
| Q |
102 |
ctagttaaaattattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgt |
201 |
Q |
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| T |
15076155 |
ctagttaaaattattgaatgaatactggtatcatgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgt |
15076254 |
T |
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| Q |
202 |
tctcct-----------------tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
254 |
Q |
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| T |
15076255 |
tctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15076324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15076022 - 15076064
Alignment:
| Q |
12 |
gattatatatctatcccagctggtataacattttttaatacca |
54 |
Q |
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| T |
15076022 |
gattatatatctatcccagctggtataacattttttaatacca |
15076064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 15215118 - 15215072
Alignment:
| Q |
208 |
tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
254 |
Q |
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| T |
15215118 |
tctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15215072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 13032958 - 13033001
Alignment:
| Q |
99 |
aatctagttaaaattattgaatgaatactggtatcgtgctataa |
142 |
Q |
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| T |
13032958 |
aatctaattaaaattattgaatgaatactggtatcgtgctataa |
13033001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 15052120 - 15052163
Alignment:
| Q |
208 |
tctcacacatatgaaagaagaccaatcaagggatggacaagaaa |
251 |
Q |
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| T |
15052120 |
tctcaaacatatgaaagaagaccaatcaagggatggacaagaaa |
15052163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 15215249 - 15215212
Alignment:
| Q |
67 |
gttccatttcataaagtattaaataaaatcctaatcta |
104 |
Q |
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| T |
15215249 |
gttccatttcataaagtattaaataaaatcctaatcta |
15215212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 4507110 - 4507071
Alignment:
| Q |
226 |
agaccaatcaagggatggacaagaaacaagccaacaagac |
265 |
Q |
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| T |
4507110 |
agaccaatcaagggatggacaagaagcatgccaacaagac |
4507071 |
T |
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