View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5402_low_9 (Length: 260)
Name: NF5402_low_9
Description: NF5402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5402_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10561054 - 10560812
Alignment:
| Q |
1 |
gattgaaatttgaaatagctgcaaagggaaattattacgctaggatcttcgatcaaattctagtaaaaccatcttgtacacaataatctcttttctataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561054 |
gattgaaatttgaaatagctgcaaagggaaattattacgctaggatcttcgatcaaattctagtaaaaccatcttgtacacaataatctcttttctataa |
10560955 |
T |
|
| Q |
101 |
gtattgaagaagatcagagttgtatccattatttgtaatagatctttgatctcgctttccttcaaagatcagttggggtaaaaacaactatacaagtgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10560954 |
gtattgaagaagatcagagttgtatccattatttgtaatagatctttgatctcgctttccttcaaagatcagttggggtaaaaacaactatacaagtgac |
10560855 |
T |
|
| Q |
201 |
ttagacaccatatcttcacccaaaatgttaaggcattaggtaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10560854 |
ttagacaccatatcttcacccaaaatgttaaggcattaggtaa |
10560812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10561125 - 10561055
Alignment:
| Q |
1 |
gattgaaatttgaaatagctgcaaagggaaattattacgctaggatcttcgatcaaattctagtaaaacca |
71 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561125 |
gattgaaatttgaaatagctgcaaaggaaaattattacgctaggatcttcgatcaaattctagtaaaacca |
10561055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 22562073 - 22562032
Alignment:
| Q |
198 |
gacttagacaccatatcttcacccaaaatgttaaggcattag |
239 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
22562073 |
gacttagacatcatatcttcatccaaaatcttaaggcattag |
22562032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 23714893 - 23714938
Alignment:
| Q |
192 |
acaagtgacttagacaccatatcttcacccaaaatgttaaggcatt |
237 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
23714893 |
acaagtgagttggacaccacatcttcacccaaaatcttaaggcatt |
23714938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University