View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5403-Insertion-3 (Length: 486)

Name: NF5403-Insertion-3
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5403-Insertion-3
NF5403-Insertion-3
[»] chr1 (10 HSPs)
chr1 (8-486)||(47712877-47713355)
chr1 (8-476)||(47759802-47760270)
chr1 (8-482)||(47717684-47718149)
chr1 (8-476)||(47745479-47745938)
chr1 (62-109)||(6523721-6523768)
chr1 (424-476)||(47704889-47704941)
chr1 (62-146)||(47778037-47778127)
chr1 (57-148)||(6521714-6521811)
chr1 (323-364)||(47811738-47811779)
chr1 (324-364)||(6521987-6522027)
[»] chr5 (5 HSPs)
chr5 (8-101)||(28856511-28856604)
chr5 (8-104)||(28861785-28861881)
chr5 (8-148)||(28831268-28831408)
chr5 (75-148)||(28875835-28875908)
chr5 (431-476)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 47713355 - 47712877
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713355 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 47713256  T
Q  108 gaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgg 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713255 gaggactacatgttgcgttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgg 47713156  T
Q  208 atctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactga 307  Q
    ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713155 atccatttaatcgagttcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactga 47713056  T
Q  308 tgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713055 tgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaa 47712956  T
Q  408 attccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgct 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712955 attccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgct 47712877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 47760270 - 47759802
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 107  Q
    ||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760270 aggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 47760171  T
Q  108 gaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgg 207  Q
    ||  ||| |||||||||||||||||||||||||||||| ||| || | ||| | ||||||||||||||||||| ||||    | |||||||| |||||||    
T  47760170 gataactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtgg 47760071  T
Q  208 atctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactga 307  Q
    ||| |||||| | ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||| | ||||||||||||||    
T  47760070 atcaatttaaccaagttcttgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactga 47759971  T
Q  308 tgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaa 407  Q
    ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||   |||||| |||||     
T  47759970 tgtaaatttgaattttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagat 47759871  T
Q  408 attccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 476  Q
    ||||||| ||  ||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47759870 attccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa 47759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 47718149 - 47717684
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 107  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47718149 aggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtat 47718050  T
Q  108 gaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgg 207  Q
    |  |||| |||||||||||||||||||||||||||||| ||| || | |||   |||||    | ||  | || || |  ||| |||| |||||||||||    
T  47718049 gttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtgg 47717950  T
Q  208 atctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactga 307  Q
    ||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| | | |||||||||       
T  47717949 atcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac--- 47717853  T
Q  308 tgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaa 407  Q
          |||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||||    
T  47717852 ------tttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaa 47717759  T
Q  408 attccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat 482  Q
    ||||| ||||| | | |||||||| ||||  ||| |||| ||||||||||||| ||||||||| ||||| |||||    
T  47717758 attcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat 47717684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 47745938 - 47745479
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 107  Q
    ||||||||||||||| ||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  47745938 aggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtat 47745839  T
Q  108 gaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgg 207  Q
    ||  ||| ||||||||||||||||||||||||||||||||||||| | ||    |||      | ||||| || ||||   |  ||||||||||| ||||    
T  47745838 gataactgcatgttgcgttactcaaaccgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtgg 47745739  T
Q  208 atctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactga 307  Q
     || |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||| | | |||||||||       
T  47745738 ctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgctaccgctaatgcaac--- 47745642  T
Q  308 tgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaa 407  Q
          |||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||  |||||| ||||||    
T  47745641 ------tttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaa 47745548  T
Q  408 attccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 476  Q
    | ||||| ||  | |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  47745547 actccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 6523721 - 6523768
Alignment:
Q  62 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 109  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6523721 tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 6523768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  424 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 476  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 47778037 - 47778127
Alignment:
Q  62 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgagg------actacatgttgcgttactcaaaccgatcaatattt 146  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||| ||||      | | |||||||||||||||| |||| |||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatattt 47778127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 6521714 - 6521811
Alignment:
Q  57 gttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggta------tgaggactacatgttgcgttactcaaaccgatcaatatttgg 148  Q
    |||||||| ||| ||| ||||| ||||| ||||||||||||||| |||||      ||| || | ||||||||||||||||||||| |||||||||||    
T  6521714 gttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttgg 6521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  323 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 364  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  324 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 364  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 28856604 - 28856511
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggt 101  Q
    |||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||  |||||||||| |||||||||||||||||    
T  28856604 aggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt 28856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 28861881 - 28861785
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttgg 104  Q
    |||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||   ||||| ||||||||||||||||||||||||    
T  28861881 aggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg 28861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 28831408 - 28831268
Alignment:
Q  8 aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtat 107  Q
    |||||||||||| ||  ||| ||||||| ||  ||| ||  |||||||||||||||| ||| ||  |||||||||||||||||||||||||  ||||  |    
T  28831408 aggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaattatttggact 28831309  T
Q  108 gaggactacatgttgcgttactcaaaccgatcaatatttgg 148  Q
    ||  | | ||||||||||||||| || || || ||||||||    
T  28831308 gacaattgcatgttgcgttactccaatcggtccatatttgg 28831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 28875908 - 28875835
Alignment:
Q  75 tgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg 148  Q
    |||||| ||| |||||||||||||||||||  |||  ||| |||| |||||||||||| ||| |||||||||||    
T  28875908 tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg 28875835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  431 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 476  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University