View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5403-Insertion-5 (Length: 303)

Name: NF5403-Insertion-5
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5403-Insertion-5
NF5403-Insertion-5
[»] chr2 (1 HSPs)
chr2 (8-303)||(2496764-2497059)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 2497059 - 2496764
Alignment:
Q  8 ccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatgaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2497059 ccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatgaatg 2496960  T
Q  108 attaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaatatnnnnnnntgatttgatctatatatttaatctgcagataacccgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  2496959 attaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaatataaaaaaatgatttgatctatatatttaatctgcagataacccgt 2496860  T
Q  208 gttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2496859 gttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttct 2496764  T

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