View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5403_high_9 (Length: 251)
Name: NF5403_high_9
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5403_high_9 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0094 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7439 - 7668
Alignment:
| Q |
1 |
taggctgaaacaactagtggaaaatgagtttcgtgaggatgaatgggtcataattttgtgatgtctaaaaagttgttcttgcgatatgtggatggaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
7439 |
taggctgaaacaactagtggaaaatgagtttcatgaggatgaatgagtcataattttgtgatgtctacaaagttgttcttgcaatatgtggatggaaatt |
7538 |
T |
|
| Q |
101 |
tgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggagttgtcagtaaagaggataatccacttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7539 |
tgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggagatgtcagtaaagaggataatccacttag |
7638 |
T |
|
| Q |
201 |
gatatttgctattgtaagagattttatggg |
230 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |
|
|
| T |
7639 |
gatatttgttattgtgagagattttatggg |
7668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37051916 - 37051686
Alignment:
| Q |
1 |
taggctgaaacaactagtggaaaatgagtttcgtgaggatgaa-tgggtcataattttgtgatgtctaaaaagttgttcttgcgatatgtggatggaaat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
37051916 |
taggctgaaacaactagtggaaaatgagttgcatgaagatgaaatgtgtcataattttgtgatgtctatgaagttgttcttgcaatatgtggatggaaat |
37051817 |
T |
|
| Q |
100 |
ttgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggagttgtcagtaaagaggataatccactta |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
37051816 |
ttgaaggagttaagaggagatgaagatagagtgatagcacgtgttaaagaaataacagaatattttcatggagatgttagtaaggaggataatccactta |
37051717 |
T |
|
| Q |
200 |
ggatatttgctattgtaagagattttatggg |
230 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |
|
|
| T |
37051716 |
ggatatttgttattgtgagagattttatggg |
37051686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17217857 - 17217631
Alignment:
| Q |
1 |
taggctgaaacaactagtggaaaatgagtttcgtgaggatgaatgggtcataattttgtgatgtctaaaaagttgttcttgcgatatgtggatggaaatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||| || ||| |||||| ||||||||||||||||| |
|
|
| T |
17217857 |
taggctgaaacaactagtggcaaatgagttgcatgaggatgaatgagtcataattttgtgatgtctatgaatttggtcttgcaatatgtggatggaaatt |
17217758 |
T |
|
| Q |
101 |
tgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggagttgtcagtaaagaggataatccacttag |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
17217757 |
tggag---ttaagaggagatgaagatagagttataacacgtgttaaagaaataacaaaatattttcatggagatgttagtaaagaggataatccacttgg |
17217661 |
T |
|
| Q |
201 |
gatatttgctattgtaagagattttatggg |
230 |
Q |
| |
|
| |||||| |||||| |||||||||||||| |
|
|
| T |
17217660 |
ggtatttgttattgtgagagattttatggg |
17217631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University