View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5403_low_1 (Length: 643)
Name: NF5403_low_1
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5403_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 19 - 633
Target Start/End: Original strand, 42520087 - 42520701
Alignment:
| Q |
19 |
gtatgatatatggctgaaaatgtgtttatataagagcagactcaatccatattcttagagggggaaaacagacaaggcccctctttgttacagattttgt |
118 |
Q |
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| T |
42520087 |
gtatgatatatggctgaaaatgtgtttatataagagcagactcaatccatattcttagagggggaaaacagacaaggcccctctttgttacagattttgt |
42520186 |
T |
|
| Q |
119 |
tcaatttttaccaagttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaacttgagatatgctgatttgagaatat |
218 |
Q |
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| T |
42520187 |
tcaatttttaccaagttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaacttgagatatgctgatttgagaatat |
42520286 |
T |
|
| Q |
219 |
gtgcatttatgtattgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaa |
318 |
Q |
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| T |
42520287 |
gtgcatttatgtattgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaa |
42520386 |
T |
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| Q |
319 |
tgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttgttcatttttggaattctttctttt |
418 |
Q |
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| T |
42520387 |
tgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatggctaggactttccatcttgttcatttttggaattctttctttt |
42520486 |
T |
|
| Q |
419 |
tatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattg |
518 |
Q |
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| T |
42520487 |
tatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattg |
42520586 |
T |
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| Q |
519 |
ctatttcagtaagtcgatcttcatgctcatctaaatactcttacttgcgatcttttccnnnnnnnattgcttgtgtttggtggtttgtgttggtatctaa |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42520587 |
ctatttcagtaagtcgatcttcatgctcatctaaatactcttacttgtgatcttttcctttttttattgcttgtgtttggtggtttgtgttggtatctaa |
42520686 |
T |
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| Q |
619 |
tctcaatttcctatg |
633 |
Q |
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| T |
42520687 |
tctcaatttcctatg |
42520701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 295 - 505
Target Start/End: Complemental strand, 19242327 - 19242117
Alignment:
| Q |
295 |
tgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttg |
394 |
Q |
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|||||||| ||||||||||||||||| |||||||| || |||||||||||| |||||||||| ||||||||||| |||| | |||||| ||||| |
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| T |
19242327 |
tgttttggtttttgcaggcataaatgctctttgtggggttggaatcctttcagtcccttatgctctcaaagaaggtggttgggctgcactttcaatctta |
19242228 |
T |
|
| Q |
395 |
ttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctg |
494 |
Q |
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| || ||| | | |||| ||||| ||||| ||||| ||||||| |||||||||||| ||||||| |||||||| || || || ||||||||||||| |
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| T |
19242227 |
ctgatattttcagtattttccttttacactggcttgctgttgcgttattgcttggacagtcaacctggacttgaaacttatcccgacattggccaagctg |
19242128 |
T |
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| Q |
495 |
cttttggtact |
505 |
Q |
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||||||||||| |
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| T |
19242127 |
cttttggtact |
19242117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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