View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5403_low_11 (Length: 245)

Name: NF5403_low_11
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5403_low_11
NF5403_low_11
[»] chr5 (3 HSPs)
chr5 (18-245)||(11641853-11642080)
chr5 (18-245)||(11623347-11623574)
chr5 (24-233)||(11603887-11604096)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 11641853 - 11642080
Alignment:
Q  18 aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11641853 aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac 11641952  T
Q  118 ataatatacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11641953 ataatgtacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg 11642052  T
Q  218 ctcctccactggtgttaagttgctcaat 245  Q
    ||||||||||||||||||||||||||||    
T  11642053 ctcctccactggtgttaagttgctcaat 11642080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 11623347 - 11623574
Alignment:
Q  18 aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  11623347 aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcagtcataaattcgtcac 11623446  T
Q  118 ataatatacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg 217  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11623447 ataatgtacataaacagaacaagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg 11623546  T
Q  218 ctcctccactggtgttaagttgctcaat 245  Q
    ||||||||||||||||||||||||||||    
T  11623547 ctcctccactggtgttaagttgctcaat 11623574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 11604096 - 11603887
Alignment:
Q  24 aagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataata 123  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||||||| || |||||||| |||||||||||||||||| | || ||||||     
T  11604096 aagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatg 11603997  T
Q  124 tacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctc 223  Q
    || |  |||| |||| ||| | |||  | |||||||||||||||||||||| | ||||||||| | ||||||| |||||| | |||||||||||||||||    
T  11603996 tattacaacaaaatacgactacatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctc 11603897  T
Q  224 cactggtgtt 233  Q
    || |||||||    
T  11603896 caatggtgtt 11603887  T

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