View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5403_low_2 (Length: 443)
Name: NF5403_low_2
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5403_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 11642084 - 11642518
Alignment:
| Q |
1 |
ctagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcatctaagtttgaagaatacaaaggtgaaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11642084 |
ctagacttgcaggatgcacctttggaggattttcctcttgaaattatcaacctttaccttctgaaacatctaagtttgaagaatacaaaggtgaaaaaca |
11642183 |
T |
|
| Q |
101 |
ttccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaattaccttttgaaattgcggagctgaaacggtt |
200 |
Q |
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| T |
11642184 |
ttccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcatggaattaccttttgaaattgcggagctgaaacggtt |
11642283 |
T |
|
| Q |
201 |
acgccacctcctggtgtatcgctacaagattgagtcctatgctcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatct |
300 |
Q |
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| T |
11642284 |
acgccacctcctggtgtatcgctacaagattgagtcctatgctcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatct |
11642383 |
T |
|
| Q |
301 |
ttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaa |
400 |
Q |
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| T |
11642384 |
ttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaa |
11642483 |
T |
|
| Q |
401 |
tgaggaaagaagatggtgcttttttgtgttcatct |
435 |
Q |
| |
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| T |
11642484 |
tgaggaaagaagatggtgctgctttgtgttcatct |
11642518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 11623578 - 11624012
Alignment:
| Q |
1 |
ctagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcatctaagtttgaagaatacaaaggtgaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
11623578 |
ctagacttgcaggatgcacctttggaggattttcctgttgaaattgtaaacctttaccttctgaagcatctaagtttgaaaaatacaaaggtgaaaagca |
11623677 |
T |
|
| Q |
101 |
ttccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaattaccttttgaaattgcggagctgaaacggtt |
200 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
11623678 |
ttccaggttcaattaagaagctgaaatacttggaaacattggatcttaagcacacttatgtcacggaattgcctgttgaagttgcggagctgaaacggtt |
11623777 |
T |
|
| Q |
201 |
acgccacctcctggtgtatcgctacaagattgagtcctatgctcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatct |
300 |
Q |
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|||||| ||||||||||||||||| | ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
11623778 |
acgccatctcctggtgtatcgctatgaaattgaatcctatgctcatttccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatca |
11623877 |
T |
|
| Q |
301 |
ttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaa |
400 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||| |
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| T |
11623878 |
ttgcaaaagctttgtttcatagaggtagatcaaggaagcagagccttgatggtagagttaggaaaactcactcaacttaggaggctaggcataagaaaaa |
11623977 |
T |
|
| Q |
401 |
tgaggaaagaagatggtgcttttttgtgttcatct |
435 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| |
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|
| T |
11623978 |
tgaggaaagaagacggtgctgctttgtgttcatct |
11624012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 11603871 - 11603438
Alignment:
| Q |
1 |
ctagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcatctaagtttgaagaatacaaaggtgaaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
11603871 |
ctagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagtttgaagaatacaaaggtgaaaaata |
11603772 |
T |
|
| Q |
101 |
ttccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaattaccttttgaaattgcggagctgaaacggtt |
200 |
Q |
| |
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||||| |||| ||||||| ||| ||| || | || |||||||||||||| ||||| | ||| || ||| | ||| ||||||||||||||||||||||||| |
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| T |
11603771 |
ttccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaacggtt |
11603672 |
T |
|
| Q |
201 |
acgccacctcctggtgtatcgctacaagattgagtcctatgctcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatct |
300 |
Q |
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|||||| ||||| |||||||| ||| ||||||| || |||||| | |||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
11603671 |
acgccatctcctcgtgtatcgttacgagattgaatcttatgctaaattccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatca |
11603572 |
T |
|
| Q |
301 |
ttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaa |
400 |
Q |
| |
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||||| |||||||||||| |||| |||||||||||||||| ||| |||||||| ||| |||||| ||| ||||||||||| | ||||||||| ||||||| |
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| T |
11603571 |
ttgcagaagctttgtttcatagaggtagatcaaggaagtgcagccttgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaaaa |
11603472 |
T |
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| Q |
401 |
tgaggaaagaagatggtgcttttttgtgttcatc |
434 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
11603471 |
tgaggaaagaagatggtgctgctttgtgttcatc |
11603438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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