View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5403_low_7 (Length: 281)
Name: NF5403_low_7
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5403_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 175651 - 175399
Alignment:
| Q |
18 |
aagttcccttctgaaaagaaagcccacgggcttatgaggaggttgtggtggcggtggtggatctttgacaagcgaaggtgatcattggcgaatttgggat |
117 |
Q |
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| T |
175651 |
aagtttccttctgaaaagaaagcccacgggcttatgaggaggttgtggtggcggcggtggatctttgacaagcgaaggtgatcattggcgaatttgggat |
175552 |
T |
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| Q |
118 |
cagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcctgtacagaatttctaacaccagatcgagagatag |
217 |
Q |
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| T |
175551 |
cagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcctgtacagaatttctaacagcagatcgagagatag |
175452 |
T |
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| Q |
218 |
cagagcaaacaggccgagggggtctgacaagttttgttttcttatattcctat |
270 |
Q |
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| T |
175451 |
cagagcaaacaggccgagggggtctgacaagttttgttttcttatatttctat |
175399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 1460283 - 1460457
Alignment:
| Q |
83 |
tgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtc |
182 |
Q |
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| T |
1460283 |
tgacaagcgaaggtgatctttggaaaatttaggatcagaaattaaagaattcaagggcttggaaacacacttgagtgtcaagagtgatttcacagggaga |
1460382 |
T |
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| Q |
183 |
ctgtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgtttt |
257 |
Q |
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| T |
1460383 |
ccgtacaaaatttctaacactagatctggtgataacaaagaaaacaggccgagggggtccgacaagttttgtttt |
1460457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 1471673 - 1471846
Alignment:
| Q |
85 |
acaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcct |
184 |
Q |
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| T |
1471673 |
acaagcgaaggtgacctttggcaaatttgggatcagaaattaagaaattcaagggcttggaaacacacttgagtgtcaagagtgatttcacagggagacc |
1471772 |
T |
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| Q |
185 |
gtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgttttct |
259 |
Q |
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| T |
1471773 |
atacagaatttctagcaccagatcgatcgataacaaagaaaacaggccga-ggggtccgaagagttttgttttct |
1471846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 1442853 - 1443030
Alignment:
| Q |
83 |
tgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtc |
182 |
Q |
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| T |
1442853 |
tgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaaatcaagagcttgcagacttacttgagtgtcaatagcgacttcaaagggagc |
1442952 |
T |
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| Q |
183 |
ctgtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgttttctt |
260 |
Q |
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| T |
1442953 |
ctgtaaaagatttctaacaccagatcaagtgataacagagcaaacatgccgagggtgtctgacgagttttgatttctt |
1443030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 371535 - 371628
Alignment:
| Q |
79 |
tctttgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgactt |
172 |
Q |
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| T |
371535 |
tctttgacaagcgaaagtgatctttggcgaatttaggatcggaaataatggaattcaagggcttgcagacacacttgagtgtcaagagtgactt |
371628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 55419058 - 55418944
Alignment:
| Q |
87 |
aagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcctgt |
186 |
Q |
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||||||| |||||| ||||| ||| ||||||||||||| |||| ||| || || ||| | ||||| |||||| ||| ||||||||| | ||| ||| | |
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| T |
55419058 |
aagcgaatgtgatctttggcaaatatgggatcagaaattaaggcattcaagggcttgcaaacacacttgagtatcatgagtgacttcacaggaagcctat |
55418959 |
T |
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| Q |
187 |
acagaatttctaaca |
201 |
Q |
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| T |
55418958 |
acaggatttctaaca |
55418944 |
T |
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