View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5403_low_9 (Length: 252)
Name: NF5403_low_9
Description: NF5403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5403_low_9 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: scaffold0094 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7398 - 7160
Alignment:
| Q |
1 |
catctaagtcaattgttgttgtcttttacacattgtacaattcagtcttgagaccagacattaattctaatttatgcttcttaacaaatttccagactga |
100 |
Q |
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||||||||||||||||| | ||||||| |||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||| |||| ||||||| |
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| T |
7398 |
catctaagtcaattgttct-gtctttttcacattgtacaattcagtgctgagaccatacactaatttgaatttatgcttcttaacaattttc-agactga |
7301 |
T |
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| Q |
101 |
taaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttcaaaaaacataaaagtcctaatacagat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
7300 |
taaaaataaatttcctaacaagtttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttaaaaaaacataaaagtcctaatacaggt |
7201 |
T |
|
| Q |
201 |
ccaactttattccaatggaaacgtatacaattcactttcat |
241 |
Q |
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| T |
7200 |
ccaactttattccaatggaaacttatacaattcactttcat |
7160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 17217900 - 17218104
Alignment:
| Q |
2 |
atctaagtcaattgttgttgtcttttacacattgtacaattcagtcttgagaccagacattaattctaatttatgcttcttaacaaatttccagactgat |
101 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||| ||| |||||| |||||| ||| || ||||||||||||||||||||| || |||||||| |
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| T |
17217900 |
atctaattcaattgttgttgtctttttaacattgtataata-agtgttgagagcagacactaagtcgaatttatgcttcttaacaaatatctagactgat |
17217998 |
T |
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| Q |
102 |
aaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttcaaaaaacataaaagtcctaatacagatc |
201 |
Q |
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| T |
17217999 |
aaaaataaatttcctaacaaatttatgcttcttactatgtataaaaggcctgattgtccaaatttatgcttcaaaaaacataaaagtcctgatacaggtc |
17218098 |
T |
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| Q |
202 |
caactt |
207 |
Q |
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|||||| |
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| T |
17218099 |
caactt |
17218104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 24458377 - 24458436
Alignment:
| Q |
102 |
aaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24458377 |
aaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
24458436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 24476584 - 24476639
Alignment:
| Q |
106 |
ataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24476584 |
ataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattatcca |
24476639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 24458579 - 24458651
Alignment:
| Q |
171 |
ttcaaaaaacataaaagtcctaatacagatccaactttattc--caatggaaacgtatacaattcactttcat |
241 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||| ||||| |||| |||||||||||||||||| |
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| T |
24458579 |
ttcaaaaaacataaaagtcgtaatacaggtccacctttattccacaatgcaaacatatacaattcactttcat |
24458651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37051957 - 37052025
Alignment:
| Q |
1 |
catctaagtcaattgttgttgtcttttacacattgtacaattcagtcttgagaccagacattaattcta |
69 |
Q |
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| T |
37051957 |
catctaagtcaattgttgctgtctttttaacattgtacaattcagtacttagaccagacactagttcta |
37052025 |
T |
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