View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404-Insertion-2 (Length: 991)
Name: NF5404-Insertion-2
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 897; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 8 - 980
Target Start/End: Original strand, 27261003 - 27261978
Alignment:
| Q |
8 |
gttcattgtttgagggataagatttcagtttcttgttagacagtaaacaatggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaaa |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261003 |
gttcattgtttgagggataagattgcagtttcttgttagacagtaaacaatggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaag |
27261102 |
T |
|
| Q |
108 |
tctgaatgggtgaagggccaaaccctccgtcaatcttcggtggccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261103 |
tctgaatgggtgaagggccaaaccctccgtcaatcttcggtggccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcct |
27261202 |
T |
|
| Q |
208 |
atgccaatgagctcgttaagaccacggtatgatacttaacttaaaaaacttgccaattagtatagctgaacttagttctttaaacaaatatgcttgaagt |
307 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261203 |
atgccaatgagctcgttaagaccgcggtatgatacttaacttaaaaaacttaccaattagtatagctgaacttagttctttaaacaaatatgcttgaagt |
27261302 |
T |
|
| Q |
308 |
taaatattcatatctataagcaagtttgaattcnnnnnnngcatagtggtattctagttttcaaagtagcatgttggttaaaccatgtataatattaatg |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261303 |
taaatattcatatctataagcaagtttgaattctttttttgcatagtggtattctagttttcaaagtagcatgttggttaaaccatgtataatattaatg |
27261402 |
T |
|
| Q |
408 |
aacttcaattattattgtccatgtttatctacttagagcattttcagtagtgtcttgttgagctctagaagttaggaacaggttcttatttgactttacc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27261403 |
aacttcaattattattgtccatgtttatctacttagagcattttcagtagtgtcttgttgagctctagaagttaggaacaggttcttatttggctttacc |
27261502 |
T |
|
| Q |
508 |
actagagatggttgaatttcatgtggttgtcacattcaacaactttagtgacttaaagtgaaaaagtagacttaagaaagtaggagaaggaaaacargtt |
607 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27261503 |
actagagatggttgaatttcatgtggttatcacattcaacaactttagtgacttaaaatgaaaaagtagacttaagaaagtaggagaaggaaaacaagtt |
27261602 |
T |
|
| Q |
608 |
gaaagtgagataaggtgagatacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggat |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261603 |
gaaagtgagataaggtgagatacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggat |
27261702 |
T |
|
| Q |
708 |
gaagctattatgattctattcaatgttggacaagttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcatt |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261703 |
gaagctattatgattctattcaatgttggacaagttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcatt |
27261802 |
T |
|
| Q |
808 |
atattttttctagaatgtatgggatttttgttgagaatttgtagatgccctaagtaacgatattccgattttacattgttgat-aaatattggatgtttc |
906 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
27261803 |
atattttttctagaatgtatgggatttttgttgagaatttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttc |
27261902 |
T |
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| Q |
907 |
attgtaataatctattgagtc-tattttttgttgc-tgtgtgtggatgcagaaaacaattgcttcaccaggacgtg |
980 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27261903 |
attgtaataatctattgagtcttattttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccaggacgtg |
27261978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 21193391 - 21193576
Alignment:
| Q |
57 |
atggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaaatctgaatgggtgaagggccaaac---cctccgtcaa---tcttcggtgg |
150 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||| |||||| ||||| || |
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| T |
21193391 |
atggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttcttctatgt |
21193490 |
T |
|
| Q |
151 |
ccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcctatgccaatgagctcgttaagaccacggta |
236 |
Q |
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| | ||| |||||||||| | ||||||||| |||| || || |||||||||||||||||| | |||||||| |||||| ||||| |
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| T |
21193491 |
ctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggta |
21193576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 27249164 - 27249349
Alignment:
| Q |
57 |
atggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaaatctgaatgggtgaagggccaaac---cctccgtcaa---tcttcggtgg |
150 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||| |||||| ||||| || |
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| T |
27249164 |
atggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttcttctatgt |
27249263 |
T |
|
| Q |
151 |
ccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcctatgccaatgagctcgttaagaccacggta |
236 |
Q |
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| | ||| |||||||||| | ||||||||| |||| || || |||||||||||||||||| | |||||||| |||||| ||||| |
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| T |
27249264 |
ctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggta |
27249349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 900 - 980
Target Start/End: Original strand, 21194295 - 21194376
Alignment:
| Q |
900 |
atgtttcattgtaataatctattgagtctattttttgttgct-gtgtgtggatgcagaaaacaattgcttcaccaggacgtg |
980 |
Q |
| |
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|||||||||||| |||| | ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
21194295 |
atgtttcattgttctaatttcttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtg |
21194376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 900 - 980
Target Start/End: Original strand, 27250068 - 27250149
Alignment:
| Q |
900 |
atgtttcattgtaataatctattgagtctattttttgttgct-gtgtgtggatgcagaaaacaattgcttcaccaggacgtg |
980 |
Q |
| |
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|||||||||||| |||| | ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
27250068 |
atgtttcattgttctaatttcttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtg |
27250149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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