View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404-Insertion-3 (Length: 958)

Name: NF5404-Insertion-3
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404-Insertion-3
NF5404-Insertion-3
[»] chr3 (29 HSPs)
chr3 (8-550)||(35768122-35768662)
chr3 (736-772)||(35767945-35767981)
chr3 (881-939)||(33386169-33386231)
chr3 (737-781)||(16792968-16793013)
chr3 (881-940)||(800716-800779)
chr3 (881-940)||(23198436-23198499)
chr3 (881-940)||(23200635-23200698)
chr3 (881-940)||(26928111-26928174)
chr3 (612-692)||(35768007-35768085)
chr3 (749-785)||(46226084-46226120)
chr3 (752-784)||(48656909-48656941)
chr3 (313-376)||(23405759-23405822)
chr3 (741-780)||(48944354-48944393)
chr3 (753-783)||(46226036-46226066)
chr3 (740-785)||(47536477-47536523)
chr3 (748-785)||(4564627-4564664)
chr3 (740-785)||(5186851-5186896)
chr3 (742-782)||(7626460-7626501)
chr3 (740-784)||(8075804-8075849)
chr3 (740-780)||(8238587-8238628)
chr3 (752-785)||(34899115-34899148)
chr3 (740-780)||(38130956-38130997)
chr3 (752-781)||(40575619-40575648)
chr3 (752-785)||(45431966-45431999)
chr3 (740-780)||(46903931-46903972)
chr3 (741-785)||(48022312-48022357)
chr3 (752-785)||(48511268-48511301)
chr3 (740-780)||(48849760-48849801)
chr3 (742-771)||(53377172-53377201)
[»] chr6 (15 HSPs)
chr6 (737-780)||(26320558-26320601)
chr6 (746-780)||(18256906-18256940)
chr6 (881-940)||(6097892-6097955)
chr6 (745-780)||(20847514-20847549)
chr6 (740-785)||(4826308-4826354)
chr6 (740-792)||(28231422-28231476)
chr6 (752-781)||(4450284-4450313)
chr6 (740-780)||(8569732-8569773)
chr6 (745-785)||(8637439-8637480)
chr6 (756-785)||(12412295-12412324)
chr6 (743-780)||(21373407-21373444)
chr6 (756-785)||(24373724-24373753)
chr6 (740-780)||(26356078-26356119)
chr6 (741-785)||(29283833-29283878)
chr6 (740-780)||(32053811-32053852)
[»] chr4 (26 HSPs)
chr4 (737-785)||(25783443-25783492)
chr4 (742-785)||(17423176-17423220)
chr4 (881-940)||(13992785-13992848)
chr4 (881-940)||(28468008-28468071)
chr4 (881-940)||(31495808-31495871)
chr4 (737-785)||(47425523-47425571)
chr4 (745-780)||(56204970-56205005)
chr4 (737-780)||(11692674-11692719)
chr4 (754-792)||(25978328-25978366)
chr4 (882-939)||(31985159-31985220)
chr4 (740-781)||(49041978-49042020)
chr4 (746-780)||(52375778-52375812)
chr4 (741-785)||(836233-836278)
chr4 (741-785)||(3346272-3346317)
chr4 (756-785)||(11286795-11286824)
chr4 (741-785)||(19997362-19997407)
chr4 (752-785)||(20799404-20799437)
chr4 (756-785)||(21317352-21317381)
chr4 (744-784)||(27871379-27871420)
chr4 (752-781)||(34834016-34834045)
chr4 (740-780)||(37921769-37921810)
chr4 (741-785)||(41520972-41521017)
chr4 (744-780)||(49953404-49953441)
chr4 (745-785)||(50362141-50362182)
chr4 (752-785)||(54500587-54500620)
chr4 (740-780)||(56551589-56551630)
[»] scaffold0491 (2 HSPs)
scaffold0491 (881-940)||(9214-9277)
scaffold0491 (881-940)||(11659-11722)
[»] scaffold0188 (1 HSPs)
scaffold0188 (881-940)||(17462-17525)
[»] chr8 (19 HSPs)
chr8 (743-779)||(40919360-40919396)
chr8 (746-780)||(7968944-7968978)
chr8 (745-779)||(44084274-44084308)
chr8 (740-781)||(13286153-13286194)
chr8 (881-940)||(26288423-26288486)
chr8 (881-940)||(26301680-26301743)
chr8 (881-940)||(26313674-26313737)
chr8 (741-780)||(27718892-27718932)
chr8 (740-780)||(43240357-43240397)
chr8 (741-780)||(7987728-7987767)
chr8 (741-780)||(8837943-8837982)
chr8 (745-780)||(30427754-30427789)
chr8 (745-783)||(44794913-44794952)
chr8 (740-785)||(7553697-7553743)
chr8 (740-785)||(8881293-8881339)
chr8 (740-780)||(12748924-12748965)
chr8 (740-780)||(32051529-32051570)
chr8 (741-785)||(33996087-33996132)
chr8 (740-780)||(37141380-37141421)
[»] chr7 (19 HSPs)
chr7 (881-940)||(39730964-39731027)
chr7 (881-939)||(48408430-48408492)
chr7 (741-786)||(18023696-18023742)
chr7 (881-940)||(21646549-21646612)
chr7 (881-940)||(43504627-43504690)
chr7 (741-780)||(47342432-47342472)
chr7 (745-787)||(3830084-3830127)
chr7 (745-780)||(3953464-3953499)
chr7 (882-940)||(2058513-2058574)
chr7 (745-779)||(10326978-10327012)
chr7 (737-779)||(24027054-24027096)
chr7 (740-792)||(42829231-42829285)
chr7 (745-779)||(45088900-45088934)
chr7 (740-780)||(19626522-19626563)
chr7 (752-781)||(20085769-20085798)
chr7 (744-785)||(25128949-25128990)
chr7 (740-780)||(27462433-27462474)
chr7 (743-779)||(39280818-39280855)
chr7 (740-780)||(46737808-46737849)
[»] chr2 (16 HSPs)
chr2 (881-940)||(32289179-32289242)
chr2 (740-785)||(26999128-26999174)
chr2 (884-940)||(25410175-25410235)
chr2 (734-785)||(7206143-7206195)
chr2 (744-780)||(12353679-12353715)
chr2 (881-939)||(3492283-3492345)
chr2 (882-940)||(4484830-4484892)
chr2 (745-780)||(9581289-9581324)
chr2 (741-779)||(32458326-32458365)
chr2 (743-780)||(24579668-24579706)
chr2 (740-785)||(29544645-29544691)
chr2 (752-785)||(20565085-20565118)
chr2 (752-785)||(31815897-31815930)
chr2 (883-940)||(32247262-32247322)
chr2 (740-780)||(33064009-33064050)
chr2 (740-780)||(42791318-42791359)
[»] chr1 (22 HSPs)
chr1 (881-940)||(24202282-24202345)
chr1 (881-939)||(19365800-19365862)
chr1 (745-787)||(21184051-21184093)
chr1 (881-939)||(19360944-19361006)
chr1 (745-780)||(30548094-30548129)
chr1 (740-792)||(16033447-16033501)
chr1 (745-779)||(27023658-27023692)
chr1 (740-780)||(5907822-5907863)
chr1 (740-780)||(6000140-6000181)
chr1 (745-781)||(10654449-10654486)
chr1 (740-780)||(16967191-16967232)
chr1 (740-780)||(25532996-25533037)
chr1 (752-785)||(32864310-32864343)
chr1 (752-785)||(36371050-36371083)
chr1 (883-940)||(39445992-39446052)
chr1 (756-792)||(41142700-41142737)
chr1 (883-940)||(41391095-41391155)
chr1 (752-785)||(41973273-41973306)
chr1 (737-782)||(42175444-42175489)
chr1 (740-780)||(45481516-45481557)
chr1 (746-779)||(47835831-47835864)
chr1 (754-783)||(47961301-47961330)
[»] chr5 (18 HSPs)
chr5 (741-780)||(20125049-20125088)
chr5 (740-785)||(11720912-11720957)
chr5 (881-940)||(9789715-9789778)
chr5 (881-940)||(16407672-16407735)
chr5 (740-780)||(21316905-21316945)
chr5 (881-940)||(26177497-26177560)
chr5 (740-780)||(35412980-35413020)
chr5 (741-784)||(35493971-35494015)
chr5 (881-939)||(15465031-15465093)
chr5 (881-939)||(16409109-16409171)
chr5 (749-780)||(39914924-39914955)
chr5 (745-780)||(41650942-41650977)
chr5 (746-781)||(43135197-43135232)
chr5 (743-780)||(20688063-20688101)
chr5 (883-940)||(15045189-15045249)
chr5 (740-780)||(22522798-22522839)
chr5 (752-785)||(30329120-30329153)
chr5 (740-780)||(40715946-40715987)
[»] scaffold0140 (1 HSPs)
scaffold0140 (884-939)||(7943-8002)
[»] scaffold0028 (1 HSPs)
scaffold0028 (741-780)||(72773-72813)
[»] scaffold0180 (1 HSPs)
scaffold0180 (745-780)||(17755-17790)
[»] scaffold0038 (1 HSPs)
scaffold0038 (740-792)||(31919-31973)
[»] scaffold1619 (1 HSPs)
scaffold1619 (752-781)||(1053-1082)
[»] scaffold1519 (1 HSPs)
scaffold1519 (882-934)||(519-575)
[»] scaffold0016 (1 HSPs)
scaffold0016 (741-792)||(99047-99100)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Complemental strand, 35768662 - 35768122
Alignment:
Q  8 cactctacttcctggtcccaaacattcataatcactgtcactgattagatcatctaactgctctgagttagccacatcatccaaaacaataagaactttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35768662 cactctacttcctggtcccaaacattcataatcactgtcactgattagatcatctaactgctctgagttagccacattatccaaaacaataagaactttt 35768563  T
Q  108 ttacgtctaagcctattgttaacatgacggtattcaactttgggtacatcaacatggagattctcttcctctaacagctctgaaaaaagcttgttgcgca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35768562 ttacgtctaagcctattgttaacatgacggtattcaactttgggtacatcaacatggagattctcttcctctaacagctctgaaaaaagcttgttgcgca 35768463  T
Q  208 agaaatctatactattcttttctgtttgttcccttacattggccaaaaagcaatgaccttcaaattgagaaaatagtttggcatgtaaagaaattgctag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35768462 agaaatctatactattcttttctgtttgttcccttacattggccaaaaagcaatgaccttcaaattgagaaaatagtttggcatgtaaagcaattgctag 35768363  T
Q  308 ggtactggtcttccctatgccacccatgccccatatcccaatccttttaacttcttttgatcccatttctaataatgatttaacaccttcataattttcc 407  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35768362 gg---tggtcttccctatgccacccatgccccatatcccaatccttttaacttcttttgatcccatttctaataatgatttaacaccttcataattttcc 35768266  T
Q  408 tcaatcccaaccactcccttcaactcaattggttgaacaagattcag-cgttgcaaaatgtctttaacaatgtctttgatgaattgagattcagacctga 506  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35768265 tcaatcccaaccactcccttcaactcaattggttgaacaaaattcagtcgttgcaaaatgtctttaacaatgtctttgatgaattgagattcagacctga 35768166  T
Q  507 catggaaatggtcacaagtgtaacgaaatgaatatcaatttaat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35768165 catggaaatggtcacaagtgtaacgaaatgaatatcaatttaat 35768122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 736 - 772
Target Start/End: Complemental strand, 35767981 - 35767945
Alignment:
Q  736 ttgaccggagtttgaacccggaccttgcatatattat 772  Q
    |||||||||||||||||||||||||||||||||||||    
T  35767981 ttgaccggagtttgaacccggaccttgcatatattat 35767945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 33386231 - 33386169
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||    
T  33386231 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 33386169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 781
Target Start/End: Original strand, 16792968 - 16793013
Alignment:
Q  737 tgaccggagtttgaaccc-ggaccttgcatatattatgcattgtct 781  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||    
T  16792968 tgaccggggtttgaaccctggaccttgcatatattatgcattgtct 16793013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 800779 - 800716
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  800779 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttccctgttcttc 800716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 23198436 - 23198499
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatg--caattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  23198436 cagctcacggcatcacaaaatcgtgtcacgatgtcaaattcgtgtcacgatttctctgttcttc 23198499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 23200635 - 23200698
Alignment:
Q  881 cagctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||| |||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  23200635 cagctcacagcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 23200698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 26928174 - 26928111
Alignment:
Q  881 cagctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    ||||||||||||| ||||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  26928174 cagctcacggcataacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 26928111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 612 - 692
Target Start/End: Complemental strand, 35768085 - 35768007
Alignment:
Q  612 aatatcaaactttctctattccacgttgattagnnnnnnnnnatcaagacgttgattagttgttatattagcaaaaagatg 692  Q
    |||||||||||||||| || |||||||||||||         ||||||||| ||||||||||||||||||| |||||||||    
T  35768085 aatatcaaactttctccatcccacgttgattagttttttt--atcaagacggtgattagttgttatattagaaaaaagatg 35768007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 749 - 785
Target Start/End: Original strand, 46226084 - 46226120
Alignment:
Q  749 gaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||||||||||||||||||||| ||||    
T  46226084 gaacccggaccttgcatatattatgcattgtccctac 46226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 784
Target Start/End: Original strand, 48656909 - 48656941
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctcta 784  Q
    |||||||||||||||||||||||||||||||||    
T  48656909 cccggaccttgcatatattatgcattgtctcta 48656941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 23405759 - 23405822
Alignment:
Q  313 tggtcttccctatgccacccatgccccatatcccaatccttttaacttcttttgatcccatttc 376  Q
    ||||||| ||||||||||||||||||||||| |||||  ||||||| || ||||| || |||||    
T  23405759 tggtctttcctatgccacccatgccccatattccaatgattttaacatcatttgacccaatttc 23405822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 780
Target Start/End: Original strand, 48944354 - 48944393
Alignment:
Q  741 cggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  48944354 cggagtttgaaccctgatcttgcatatattatgcattgtc 48944393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 753 - 783
Target Start/End: Original strand, 46226036 - 46226066
Alignment:
Q  753 ccggaccttgcatatattatgcattgtctct 783  Q
    |||||||||||||||||||||||||||||||    
T  46226036 ccggaccttgcatatattatgcattgtctct 46226066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 785
Target Start/End: Original strand, 47536477 - 47536523
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  47536477 ccggagtttgaacctcggaccttgcatattttatgcattgtccctac 47536523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 785
Target Start/End: Complemental strand, 4564664 - 4564627
Alignment:
Q  748 tgaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  4564664 tgaatccggaccttgcatatattatgcattgtccctac 4564627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 5186896 - 5186851
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||| |||||||||||||||| |||||||| ||||    
T  5186896 ccggggtttgaacccagaccttgcatatattaagcattgtccctac 5186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 782
Target Start/End: Original strand, 7626460 - 7626501
Alignment:
Q  742 ggagtttgaaccc-ggaccttgcatatattatgcattgtctc 782  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  7626460 ggagtttgaaccccggaccttgcatattttatgcattgtctc 7626501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 784
Target Start/End: Complemental strand, 8075849 - 8075804
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtctcta 784  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||    
T  8075849 ccggggtttgaacctcagaccttgcatatattatgcattgtctcta 8075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 8238628 - 8238587
Alignment:
Q  740 ccggagtttgaacccg-gaccttgcatatattatgcattgtc 780  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  8238628 ccggagtttgaaccccagaccttgcatatattatgcattgtc 8238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 34899148 - 34899115
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  34899148 cccggaccttgcatatattatgcattgtccctac 34899115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 38130956 - 38130997
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  38130956 ccggggtttgaaccccggaccttgcatatattatgcattgtc 38130997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Original strand, 40575619 - 40575648
Alignment:
Q  752 cccggaccttgcatatattatgcattgtct 781  Q
    ||||||||||||||||||||||||||||||    
T  40575619 cccggaccttgcatatattatgcattgtct 40575648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 45431999 - 45431966
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  45431999 cccggaccttgcatatattatgcattgtccctac 45431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 46903972 - 46903931
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  46903972 ccggagtttgaaccctggaccttacatatattatgcattgtc 46903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Original strand, 48022312 - 48022357
Alignment:
Q  741 cggagtttgaacccggacctt-gcatatattatgcattgtctctac 785  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||    
T  48022312 cggagtttgaaccccgaactttgcatatattatgcattgtctctac 48022357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 48511301 - 48511268
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  48511301 cccggaccttgcatatattatgcattgtccctac 48511268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 48849760 - 48849801
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  48849760 ccggggtttgaaccccggaccttgcatatattatgcattgtc 48849801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 771
Target Start/End: Original strand, 53377172 - 53377201
Alignment:
Q  742 ggagtttgaacccggaccttgcatatatta 771  Q
    ||||||||||||||||||||||||||||||    
T  53377172 ggagtttgaacccggaccttgcatatatta 53377201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 780
Target Start/End: Original strand, 26320558 - 26320601
Alignment:
Q  737 tgaccggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  26320558 tgaccggagtttgaacccggaccttgcatattttatgcattgtc 26320601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 746 - 780
Target Start/End: Complemental strand, 18256940 - 18256906
Alignment:
Q  746 tttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||||||||||||||||||||||||    
T  18256940 tttgaacccggaccttgcatatattatgcattgtc 18256906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 6097892 - 6097955
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  6097892 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcaggatttccctgttcttc 6097955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Original strand, 20847514 - 20847549
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||||||||||| ||||||||||||    
T  20847514 gtttgaacccggaccttgcatattttatgcattgtc 20847549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 4826354 - 4826308
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||    
T  4826354 ccggagtttgaacctcgaaccttacatatattatgcattgtctctac 4826308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 28231422 - 28231476
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctcta-caactgag 792  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  28231422 ccggagtgtgaaccccggaccttgcatatattatgcattgtccctatcaactgag 28231476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Complemental strand, 4450313 - 4450284
Alignment:
Q  752 cccggaccttgcatatattatgcattgtct 781  Q
    ||||||||||||||||||||||||||||||    
T  4450313 cccggaccttgcatatattatgcattgtct 4450284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 8569773 - 8569732
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  8569773 ccggggtttgaaccccggaccttgcatatattatgcattgtc 8569732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 8637439 - 8637480
Alignment:
Q  745 gtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  8637439 gtttgaacctcggaccttgcatatattatgcattgtccctac 8637480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Complemental strand, 12412324 - 12412295
Alignment:
Q  756 gaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||||    
T  12412324 gaccttgcatatattatgcattgtctctac 12412295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 780
Target Start/End: Original strand, 21373407 - 21373444
Alignment:
Q  743 gagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  21373407 gagtttgaacctggaccttgcatattttatgcattgtc 21373444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Original strand, 24373724 - 24373753
Alignment:
Q  756 gaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||||    
T  24373724 gaccttgcatatattatgcattgtctctac 24373753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 26356078 - 26356119
Alignment:
Q  740 ccggagtttgaacccgga-ccttgcatatattatgcattgtc 780  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  26356078 ccggagtttgaaccccgaaccttgcatatattatgcattgtc 26356119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Complemental strand, 29283878 - 29283833
Alignment:
Q  741 cggagtttgaacccg-gaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||    
T  29283878 cggagtttgaaccctagaccttgcatatattatacattgtctctac 29283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 32053852 - 32053811
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  32053852 ccggagtttgaaccacgaaccttgcatatattatgcattgtc 32053811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 737 - 785
Target Start/End: Original strand, 25783443 - 25783492
Alignment:
Q  737 tgaccggagtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  25783443 tgaccggagtttgaaccccggaccttgcatatattatgcattgtccctac 25783492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 742 - 785
Target Start/End: Original strand, 17423176 - 17423220
Alignment:
Q  742 ggagtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  17423176 ggagtttgaaccccggaccttgcatatattatgcattgtctctac 17423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 13992785 - 13992848
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  13992785 cagctcacgacatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 13992848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 28468071 - 28468008
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||||||| |||||||  ||||||||||| ||||||||||||||||    
T  28468071 cagctcacggcatcacaaaatcgtgttacgatgccaaattcgtgtcacgatttctctgttcttc 28468008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 31495808 - 31495871
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  31495808 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttccctgttcttc 31495871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 737 - 785
Target Start/End: Original strand, 47425523 - 47425571
Alignment:
Q  737 tgaccggagtttgaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||| ||||||||||||||||||||  |||||||||||    
T  47425523 tgactggagtttgaatccggaccttgcatatattatatattgtctctac 47425571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Complemental strand, 56205005 - 56204970
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||| ||||||||||||||||||||||||||||    
T  56205005 gtttgaatccggaccttgcatatattatgcattgtc 56204970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 737 - 780
Target Start/End: Complemental strand, 11692719 - 11692674
Alignment:
Q  737 tgaccggagtttgaacccg--gaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||||||   |||||||||||||||||||||||||    
T  11692719 tgaccggagtttgaacccccagaccttgcatatattatgcattgtc 11692674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 792
Target Start/End: Complemental strand, 25978366 - 25978328
Alignment:
Q  754 cggaccttgcatatattatgcattgtctctacaactgag 792  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  25978366 cggaccttgcatatattatgcattgtccttacaactgag 25978328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 939
Target Start/End: Complemental strand, 31985220 - 31985159
Alignment:
Q  882 agctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||||| |||||||||||||||    
T  31985220 agctcacggtatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 31985159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 781
Target Start/End: Original strand, 49041978 - 49042020
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtct 781  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  49041978 ccggggtttgaaccccggaccttgcatatattatgcattgtct 49042020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 746 - 780
Target Start/End: Original strand, 52375778 - 52375812
Alignment:
Q  746 tttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||| |||||||||||||||||||||||||    
T  52375778 tttgaacccagaccttgcatatattatgcattgtc 52375812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Original strand, 836233 - 836278
Alignment:
Q  741 cggagtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  836233 cggagtttgaacctcggaccttgcatatattttgcattgtccctac 836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Original strand, 3346272 - 3346317
Alignment:
Q  741 cggagtttga-acccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||    
T  3346272 cggagtttgacactcggaccttgcatatattatgcattgtccctac 3346317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Original strand, 11286795 - 11286824
Alignment:
Q  756 gaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||||    
T  11286795 gaccttgcatatattatgcattgtctctac 11286824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Original strand, 19997362 - 19997407
Alignment:
Q  741 cggagtttgaacccggacctt-gcatatattatgcattgtctctac 785  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||    
T  19997362 cggagtttgaaccccgaactttgcatatattatgcattgtctctac 19997407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Original strand, 20799404 - 20799437
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  20799404 cccggaccttgcatatattatgcattgtccctac 20799437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Original strand, 21317352 - 21317381
Alignment:
Q  756 gaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||||    
T  21317352 gaccttgcatatattatgcattgtctctac 21317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 784
Target Start/End: Original strand, 27871379 - 27871420
Alignment:
Q  744 agtttgaacc-cggaccttgcatatattatgcattgtctcta 784  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  27871379 agtttgaacctcggaccttgcatatattatacattgtctcta 27871420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Original strand, 34834016 - 34834045
Alignment:
Q  752 cccggaccttgcatatattatgcattgtct 781  Q
    ||||||||||||||||||||||||||||||    
T  34834016 cccggaccttgcatatattatgcattgtct 34834045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 37921810 - 37921769
Alignment:
Q  740 ccggagtttgaa-cccggaccttgcatatattatgcattgtc 780  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  37921810 ccggggtttgaatcccggaccttgcatatattatgcattgtc 37921769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Complemental strand, 41521017 - 41520972
Alignment:
Q  741 cggagtttgaacccgga-ccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||  || ||||||||||||||||||||||||||||    
T  41521017 cggagtttgaaccttgaaccttgcatatattatgcattgtctctac 41520972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 780
Target Start/End: Original strand, 49953404 - 49953441
Alignment:
Q  744 agtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49953404 agtttgaaccccggaccttgcatatattatgcattgtc 49953441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 50362141 - 50362182
Alignment:
Q  745 gtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  50362141 gtttgaaccctggaccttgcatatattatgcattgtccctac 50362182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 54500620 - 54500587
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||| |||||||||||||||||||||||    
T  54500620 cccggaccttacatatattatgcattgtctctac 54500587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 56551589 - 56551630
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtc 780  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  56551589 ccggggtttgaacctcggaccttgcatatattatgcattgtc 56551630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 9214 - 9277
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  9214 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 9277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 11659 - 11722
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  11659 cagctcacggcatcatgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 11722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 17525 - 17462
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  17525 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 17462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 743 - 779
Target Start/End: Original strand, 40919360 - 40919396
Alignment:
Q  743 gagtttgaacccggaccttgcatatattatgcattgt 779  Q
    |||||||||||||||||||||||||||||||||||||    
T  40919360 gagtttgaacccggaccttgcatatattatgcattgt 40919396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 746 - 780
Target Start/End: Original strand, 7968944 - 7968978
Alignment:
Q  746 tttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||||||||||||||||||||||||    
T  7968944 tttgaacccggaccttgcatatattatgcattgtc 7968978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 779
Target Start/End: Original strand, 44084274 - 44084308
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgt 779  Q
    |||||||||||||||||||||||||||||||||||    
T  44084274 gtttgaacccggaccttgcatatattatgcattgt 44084308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 781
Target Start/End: Complemental strand, 13286194 - 13286153
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtct 781  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  13286194 ccggggtttgaacccggatcttgcatatattatgcattgtct 13286153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 26288423 - 26288486
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  26288423 cagctcacggcatcacaaaatcatgtcacgatgccaaattcgtgtcacgatttctctgttcttc 26288486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 26301680 - 26301743
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  26301680 cagctcacggcatcacaaaatcatgtcacgatgccaaattcgtgtcacgatttctctgttcttc 26301743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 26313674 - 26313737
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  26313674 cagctcacggcatcacaaaatcatgtcacgatgccaaattcgtgtcacgatttctctgttcttc 26313737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 780
Target Start/End: Original strand, 27718892 - 27718932
Alignment:
Q  741 cggagtttgaac-ccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  27718892 cggagtttgaactccggaccttgcatatattatgcattgtc 27718932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 43240397 - 43240357
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  43240397 ccggagttcgaacccggatcttgcatatattatgcattgtc 43240357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 780
Target Start/End: Original strand, 7987728 - 7987767
Alignment:
Q  741 cggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  7987728 cggaatttgaacccggaccttgcatatattatgtattgtc 7987767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 780
Target Start/End: Complemental strand, 8837982 - 8837943
Alignment:
Q  741 cggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  8837982 cggaatttgaacccggaccttgtatatattatgcattgtc 8837943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Complemental strand, 30427789 - 30427754
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30427789 gtttgaacctggaccttgcatatattatgcattgtc 30427754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 783
Target Start/End: Complemental strand, 44794952 - 44794913
Alignment:
Q  745 gtttgaac-ccggaccttgcatatattatgcattgtctct 783  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  44794952 gtttgaactccggaccttgcatatattatgcattgtctct 44794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 7553743 - 7553697
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||    
T  7553743 ccggagtttgaaccttggaccttgcatatattatgcattgtccctac 7553697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 8881339 - 8881293
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||    
T  8881339 ccggggtttgaaccctggaccttgcatatattatgcattgtccctac 8881293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 12748965 - 12748924
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  12748965 ccggggtttgaaccccggaccttgcatatattatgcattgtc 12748924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 32051529 - 32051570
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  32051529 ccggggtttgaaccccggaccttgcatatattatgcattgtc 32051570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 785
Target Start/End: Complemental strand, 33996132 - 33996087
Alignment:
Q  741 cggagtttgaacccggacctt-gcatatattatgcattgtctctac 785  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||    
T  33996132 cggagtttgaaccccgaactttgcatatattatgcattgtctctac 33996087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 37141421 - 37141380
Alignment:
Q  740 ccggagtttgaacccgga-ccttgcatatattatgcattgtc 780  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  37141421 ccggagtttgaaccccgaaccttgcatatattatgcattgtc 37141380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 39731027 - 39730964
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  39731027 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 39730964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 48408492 - 48408430
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||    
T  48408492 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 48408430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 741 - 786
Target Start/End: Complemental strand, 18023742 - 18023696
Alignment:
Q  741 cggagtttgaaccc-ggaccttgcatatattatgcattgtctctaca 786  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  18023742 cggagtttgaaccctggaccttgcatatattatgcattgtccctaca 18023696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 21646549 - 21646612
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  |||| |||||| ||||||||||||||||    
T  21646549 cagctcacggcatcacgaaatcgtgtcacgatgccaaatttgtgtcacgatttctctgttcttc 21646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 43504627 - 43504690
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  43504627 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttccctgttcttc 43504690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 780
Target Start/End: Original strand, 47342432 - 47342472
Alignment:
Q  741 cggagtttgaac-ccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  47342432 cggagtttgaactccggaccttgcatatattatgcattgtc 47342472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 3830127 - 3830084
Alignment:
Q  745 gtttgaaccc-ggaccttgcatatattatgcattgtctctacaa 787  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  3830127 gtttgaaccctggaccttgcatatattatgcattgtccctacaa 3830084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Complemental strand, 3953499 - 3953464
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3953499 gtttgaacccgaaccttgcatatattatgcattgtc 3953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 940
Target Start/End: Original strand, 2058513 - 2058574
Alignment:
Q  882 agctcacggcatcacaaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    ||||||||||| | ||||||||||||||||||  || |||||||| ||||||||||||||||    
T  2058513 agctcacggcacctcaaatcgtgtcacgatgccaaaatcgtgtcacgatttctctgttcttc 2058574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 779
Target Start/End: Complemental strand, 10327012 - 10326978
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgt 779  Q
    ||||||||| |||||||||||||||||||||||||    
T  10327012 gtttgaacctggaccttgcatatattatgcattgt 10326978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 737 - 779
Target Start/End: Original strand, 24027054 - 24027096
Alignment:
Q  737 tgaccggagtttgaacccggaccttgcatatattatgcattgt 779  Q
    ||||||| |||||||||| |||||||||||| |||||||||||    
T  24027054 tgaccggggtttgaaccccgaccttgcatattttatgcattgt 24027096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 42829231 - 42829285
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctcta-caactgag 792  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||    
T  42829231 ccggagtttgaaccccggagcttgcatatattatgcattgtccctatcaactgag 42829285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 779
Target Start/End: Complemental strand, 45088934 - 45088900
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgt 779  Q
    |||||||||| ||||||||||||||||||||||||    
T  45088934 gtttgaaccccgaccttgcatatattatgcattgt 45088900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 19626522 - 19626563
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  19626522 ccggtgtttgaaccccggaccttgcatatattatgcattgtc 19626563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Original strand, 20085769 - 20085798
Alignment:
Q  752 cccggaccttgcatatattatgcattgtct 781  Q
    ||||||||||||||||||||||||||||||    
T  20085769 cccggaccttgcatatattatgcattgtct 20085798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 785
Target Start/End: Original strand, 25128949 - 25128990
Alignment:
Q  744 agtttgaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||| |||||||||||||||| ||||||| ||||    
T  25128949 agtttgaacccgaaccttgcatatattatacattgtccctac 25128990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 27462433 - 27462474
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  27462433 ccggggtttgaaccccggaccttgcatatattatgcattgtc 27462474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 779
Target Start/End: Original strand, 39280818 - 39280855
Alignment:
Q  743 gagtttgaaccc-ggaccttgcatatattatgcattgt 779  Q
    |||||||||||| |||||||||||||||||||||||||    
T  39280818 gagtttgaaccccggaccttgcatatattatgcattgt 39280855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 46737849 - 46737808
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  46737849 ccggtgtttgaaccccggaccttgcatatattatgcattgtc 46737808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 32289242 - 32289179
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  32289242 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 32289179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 26999174 - 26999128
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  26999174 ccggagtttgaaccgcagaccttgcatatattatgcattgtctctac 26999128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 884 - 940
Target Start/End: Original strand, 25410175 - 25410235
Alignment:
Q  884 ctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  25410175 ctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 25410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 785
Target Start/End: Complemental strand, 7206195 - 7206143
Alignment:
Q  734 tgttgaccggagtttgaacc-cggaccttgcatatattatgcattgtctctac 785  Q
    ||||| |||| |||| |||| ||||||||||||||||||||||||||||||||    
T  7206195 tgttggccggggtttaaacctcggaccttgcatatattatgcattgtctctac 7206143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 780
Target Start/End: Complemental strand, 12353715 - 12353679
Alignment:
Q  744 agtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||||| ||||||||||||||||||||    
T  12353715 agtttgaacccggaccctgcatatattatgcattgtc 12353679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 939
Target Start/End: Original strand, 3492283 - 3492345
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||||||    
T  3492283 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacaatttctctgttctt 3492345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 882 - 940
Target Start/End: Original strand, 4484830 - 4484892
Alignment:
Q  882 agctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  4484830 agctcacggcatcatgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 4484892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Original strand, 9581289 - 9581324
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||||||||||||||||| |||||||    
T  9581289 gtttgaacccggaccttgcatatattattcattgtc 9581324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 779
Target Start/End: Complemental strand, 32458365 - 32458326
Alignment:
Q  741 cggagtttgaaccc-ggaccttgcatatattatgcattgt 779  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32458365 cggagtttgaaccctggaccttgcatatattatgcattgt 32458326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 780
Target Start/End: Original strand, 24579668 - 24579706
Alignment:
Q  743 gagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  24579668 gagtttgaaccctggaccttgcatatattatgcattgtc 24579706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 29544691 - 29544645
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||    
T  29544691 ccggggtttgaaccccggaccttgcatatattatgcattgtccctac 29544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Original strand, 20565085 - 20565118
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  20565085 cccggaccttgcatatattatgcattgtccctac 20565118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Original strand, 31815897 - 31815930
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  31815897 cccggaccttgcatatattatgcattgtccctac 31815930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 940
Target Start/End: Original strand, 32247262 - 32247322
Alignment:
Q  883 gctcacggcatcacaaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||| |||||||||||||||| |  || |||||||| ||||||||||||||||    
T  32247262 gctcacggcatctcaaatcgtgtcacgattccaaaatcgtgtcacgatttctctgttcttc 32247322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 33064050 - 33064009
Alignment:
Q  740 ccggagtttgaac-ccggaccttgcatatattatgcattgtc 780  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  33064050 ccggagttcgaactccggaccttgcatatattatgcattgtc 33064009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 42791359 - 42791318
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  42791359 ccggggtttgaaccccggaccttgcatatattatgcattgtc 42791318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 24202345 - 24202282
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  24202345 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttcttc 24202282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 19365862 - 19365800
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||    
T  19365862 cagctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 19365800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 787
Target Start/End: Original strand, 21184051 - 21184093
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtctctacaa 787  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  21184051 gtttgaacccggacattgcatatattatgtattgtctctacaa 21184093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 19361006 - 19360944
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| ||||||||||||||| |  ||||||||||| |||||||||||||||    
T  19361006 cagctcacggcatcacaaaatcgtgtcacgataccaaattcgtgtcacgatttctctgttctt 19360944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Original strand, 30548094 - 30548129
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30548094 gtttgaacccgaaccttgcatatattatgcattgtc 30548129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 16033447 - 16033501
Alignment:
Q  740 ccggagtttgaacccg-gaccttgcatatattatgcattgtctcta-caactgag 792  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  16033447 ccggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactgag 16033501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 779
Target Start/End: Original strand, 27023658 - 27023692
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgt 779  Q
    ||||||||||| |||||||||||||||||||||||    
T  27023658 gtttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 5907863 - 5907822
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  5907863 ccggggtttgaaccctggaccttgcatatattatgcattgtc 5907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 6000140 - 6000181
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtc 780  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  6000140 ccggggtttgaacctcggaccttgcatatattatgcattgtc 6000181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 781
Target Start/End: Original strand, 10654449 - 10654486
Alignment:
Q  745 gtttgaacc-cggaccttgcatatattatgcattgtct 781  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10654449 gtttgaaccacggaccttgcatatattatgcattgtct 10654486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 16967191 - 16967232
Alignment:
Q  740 ccggagtttgaacc-cggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  16967191 ccggagtttgaacctcgaaccttgcatatattatgcattgtc 16967232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 25533037 - 25532996
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  25533037 ccggggtttgaaccccggaccttgcatatattatgcattgtc 25532996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 32864343 - 32864310
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||| ||||||||||||||||||||||||||    
T  32864343 cccggactttgcatatattatgcattgtctctac 32864310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Original strand, 36371050 - 36371083
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||| |||||||||||||||||||||||    
T  36371050 cccggaccttacatatattatgcattgtctctac 36371083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 940
Target Start/End: Original strand, 39445992 - 39446052
Alignment:
Q  883 gctcacggcatcacaaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||| |||||||||||||||| |  || |||||||| ||||||||||||||||    
T  39445992 gctcacggcatctcaaatcgtgtcacgattccaaaatcgtgtcacgatttctctgttcttc 39446052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 792
Target Start/End: Original strand, 41142700 - 41142737
Alignment:
Q  756 gaccttgcatatattatgcattgtctcta-caactgag 792  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41142700 gaccttgcatatattatgcattgtctctatcaactgag 41142737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 940
Target Start/End: Original strand, 41391095 - 41391155
Alignment:
Q  883 gctcacggcatcacaaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||| |||||||||||||||| |  || |||||||| ||||||||||||||||    
T  41391095 gctcacggcatctcaaatcgtgtcacgattccaaaatcgtgtcacgatttctctgttcttc 41391155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 41973306 - 41973273
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    ||||||||||||||||||||||||||||| ||||    
T  41973306 cccggaccttgcatatattatgcattgtccctac 41973273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 782
Target Start/End: Original strand, 42175444 - 42175489
Alignment:
Q  737 tgaccggagtttgaacccggaccttgcatatattatgcattgtctc 782  Q
    |||||||  |||||||||||| |||||||||||||| |||||||||    
T  42175444 tgaccgggatttgaacccggatcttgcatatattatacattgtctc 42175489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 45481557 - 45481516
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  45481557 ccggagttcgaaccccggaccttgcatatattatgcattgtc 45481516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 779
Target Start/End: Complemental strand, 47835864 - 47835831
Alignment:
Q  746 tttgaacccggaccttgcatatattatgcattgt 779  Q
    |||||||||||||||||||||| |||||||||||    
T  47835864 tttgaacccggaccttgcatattttatgcattgt 47835831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 783
Target Start/End: Original strand, 47961301 - 47961330
Alignment:
Q  754 cggaccttgcatatattatgcattgtctct 783  Q
    ||||||||||||||||||||||||||||||    
T  47961301 cggaccttgcatatattatgcattgtctct 47961330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 741 - 780
Target Start/End: Complemental strand, 20125088 - 20125049
Alignment:
Q  741 cggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  20125088 cggagtttgaacccgaaccttgcatatattatgcattgtc 20125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 785
Target Start/End: Complemental strand, 11720957 - 11720912
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtctctac 785  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  11720957 ccggggtttgaaccccgaccttgcatatattatgcattgtccctac 11720912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Original strand, 9789715 - 9789778
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  9789715 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttccctgttcttc 9789778  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 16407735 - 16407672
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatg--caattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  16407735 cagctcacggcatcacaaaatcgtgtcacgatgtcaaattcgtgtcacgatttctctgttcttc 16407672  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 21316945 - 21316905
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  21316945 ccggggtttgaacccggacctttcatatattatgcattgtc 21316905  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 940
Target Start/End: Complemental strand, 26177560 - 26177497
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||    
T  26177560 cagctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttccctgttcttc 26177497  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 780
Target Start/End: Complemental strand, 35413020 - 35412980
Alignment:
Q  740 ccggagtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  35413020 ccggggttcgaacccggaccttgcatatattatgcattgtc 35412980  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 784
Target Start/End: Original strand, 35493971 - 35494015
Alignment:
Q  741 cggagtttgaa-cccggaccttgcatatattatgcattgtctcta 784  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  35493971 cggagtttgaatcccgaaccttgcatatattatgcattgtctcta 35494015  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 939
Target Start/End: Original strand, 15465031 - 15465093
Alignment:
Q  881 cagctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| ||||||||||||||| |  ||||||||||| |||||||||||||||    
T  15465031 cagctcacggcatcacaaaatcgtgtcacgataccaaattcgtgtcacgatttctctgttctt 15465093  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 16409171 - 16409109
Alignment:
Q  881 cagctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    ||||||||| ||||||||| ||||||||||||||  ||||||||||| |||||||||||||||    
T  16409171 cagctcacgacatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 16409109  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 780
Target Start/End: Complemental strand, 39914955 - 39914924
Alignment:
Q  749 gaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||||||||||||||||||||    
T  39914955 gaacccggaccttgcatatattatgcattgtc 39914924  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Original strand, 41650942 - 41650977
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    |||||||| |||||||||||||||||||||||||||    
T  41650942 gtttgaactcggaccttgcatatattatgcattgtc 41650977  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 781
Target Start/End: Original strand, 43135197 - 43135232
Alignment:
Q  746 tttgaacccggaccttgcatatattatgcattgtct 781  Q
    |||||||||||||||| |||||||||||||||||||    
T  43135197 tttgaacccggaccttacatatattatgcattgtct 43135232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 780
Target Start/End: Complemental strand, 20688101 - 20688063
Alignment:
Q  743 gagtttgaac-ccggaccttgcatatattatgcattgtc 780  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  20688101 gagtttgaactccggaccttgcatatattatgcattgtc 20688063  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 940
Target Start/End: Original strand, 15045189 - 15045249
Alignment:
Q  883 gctcacggcatcacaaatcgtgtcacgatgc--aattcgtgtca-gatttctctgttcttc 940  Q
    |||||||||||| |||||||||||||||| |  || |||||||| ||||||||||||||||    
T  15045189 gctcacggcatctcaaatcgtgtcacgattccaaaatcgtgtcacgatttctctgttcttc 15045249  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 22522798 - 22522839
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  22522798 ccggggtttgaaccccggaccttgcatatattatgcattgtc 22522839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 30329153 - 30329120
Alignment:
Q  752 cccggaccttgcatatattatgcattgtctctac 785  Q
    |||||||||||| |||||||||||||||||||||    
T  30329153 cccggaccttgcgtatattatgcattgtctctac 30329120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 40715946 - 40715987
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  40715946 ccggggtttgaaccccggaccttgcatatattatgcattgtc 40715987  T

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Target: scaffold0140 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 939
Target Start/End: Complemental strand, 8002 - 7943
Alignment:
Q  884 ctcacggcatcacaaa-tcgtgtcacgatgc--aattcgtgtca-gatttctctgttctt 939  Q
    |||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||    
T  8002 ctcacggcatcacaaaatcgtgtcacgatgccaaattcgtgtcacgatttctctgttctt 7943  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 780
Target Start/End: Original strand, 72773 - 72813
Alignment:
Q  741 cggagtttgaaccc-ggaccttgcatatattatgcattgtc 780  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  72773 cggagtttgaaccctggaccttgcatatattatgcattgtc 72813  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 780
Target Start/End: Complemental strand, 17790 - 17755
Alignment:
Q  745 gtttgaacccggaccttgcatatattatgcattgtc 780  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17790 gtttgaacccggaccttgcatgtattatgcattgtc 17755  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 31919 - 31973
Alignment:
Q  740 ccggagtttgaaccc-ggaccttgcatatattatgcattgtctcta-caactgag 792  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  31919 ccggagtgtgaaccccggaccttgcatatattatgcattgtccctatcaactgag 31973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1619 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Complemental strand, 1082 - 1053
Alignment:
Q  752 cccggaccttgcatatattatgcattgtct 781  Q
    ||||||||||||||||||||||||||||||    
T  1082 cccggaccttgcatatattatgcattgtct 1053  T

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Target: scaffold1519 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 882 - 934
Target Start/End: Complemental strand, 575 - 519
Alignment:
Q  882 agctcacggcatcac-aaatcgtgtcacgatgc--aattcgtgtca-gatttctctg 934  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||    
T  575 agctcacggcatcacgaaatcgtgtcacgatgccaaattcgtgtcacgatttctctg 519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 792
Target Start/End: Complemental strand, 99100 - 99047
Alignment:
Q  741 cggagtttgaacccg-gaccttgcatatattatgcattgtctcta-caactgag 792  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  99100 cggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactgag 99047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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