View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404-Insertion-4 (Length: 740)

Name: NF5404-Insertion-4
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404-Insertion-4
NF5404-Insertion-4
[»] chr3 (23 HSPs)
chr3 (279-740)||(50095175-50095636)
chr3 (8-282)||(50094860-50095133)
chr3 (189-237)||(25627908-25627956)
chr3 (189-237)||(22339809-22339857)
chr3 (189-237)||(51642416-51642464)
chr3 (190-237)||(9264075-9264122)
chr3 (190-237)||(9264282-9264329)
chr3 (190-237)||(22407430-22407477)
chr3 (190-237)||(22407637-22407684)
chr3 (190-237)||(44573707-44573754)
chr3 (190-237)||(44574004-44574051)
chr3 (190-237)||(47833642-47833689)
chr3 (190-237)||(50692391-50692438)
chr3 (190-237)||(50692594-50692641)
chr3 (190-237)||(51338392-51338439)
chr3 (190-237)||(51642624-51642671)
chr3 (199-237)||(9179201-9179239)
chr3 (195-237)||(13769285-13769327)
chr3 (192-237)||(4191113-4191158)
chr3 (190-235)||(4255989-4256034)
chr3 (192-237)||(5440685-5440730)
chr3 (189-226)||(21832187-21832224)
chr3 (189-226)||(50203845-50203882)
[»] chr5 (20 HSPs)
chr5 (309-399)||(35497317-35497406)
chr5 (190-237)||(18914150-18914197)
chr5 (190-236)||(40168848-40168894)
chr5 (189-237)||(873684-873732)
chr5 (190-226)||(13844092-13844128)
chr5 (190-237)||(2908758-2908805)
chr5 (190-237)||(3762974-3763021)
chr5 (190-237)||(12965235-12965282)
chr5 (190-237)||(13413652-13413699)
chr5 (190-237)||(13843765-13843812)
chr5 (190-237)||(15287121-15287168)
chr5 (190-237)||(18914357-18914404)
chr5 (190-237)||(24994137-24994184)
chr5 (190-237)||(34457164-34457211)
chr5 (190-237)||(34457371-34457418)
chr5 (190-237)||(38131832-38131879)
chr5 (190-237)||(40169030-40169077)
chr5 (192-237)||(24918229-24918274)
chr5 (192-225)||(26246004-26246037)
chr5 (192-237)||(28358026-28358071)
[»] chr8 (17 HSPs)
chr8 (189-237)||(20298504-20298552)
chr8 (189-237)||(21085136-21085184)
chr8 (236-276)||(36994023-36994063)
chr8 (190-237)||(3183900-3183947)
chr8 (190-237)||(7621962-7622009)
chr8 (190-237)||(10989023-10989070)
chr8 (190-237)||(10989230-10989277)
chr8 (190-237)||(16454624-16454671)
chr8 (190-237)||(18905924-18905971)
chr8 (190-237)||(32931469-32931516)
chr8 (190-237)||(36997234-36997281)
chr8 (190-237)||(43599379-43599426)
chr8 (190-236)||(33435748-33435794)
chr8 (190-236)||(40754513-40754559)
chr8 (190-227)||(30066060-30066097)
chr8 (236-273)||(34248335-34248372)
chr8 (190-227)||(43599550-43599587)
[»] chr7 (9 HSPs)
chr7 (190-237)||(23821665-23821712)
chr7 (190-233)||(258501-258544)
chr7 (190-237)||(1663593-1663640)
chr7 (190-237)||(6783106-6783153)
chr7 (190-237)||(8585159-8585206)
chr7 (190-237)||(23396677-23396724)
chr7 (190-237)||(41670901-41670948)
chr7 (190-235)||(5775952-5775997)
chr7 (192-237)||(29780215-29780260)
[»] chr2 (8 HSPs)
chr2 (190-237)||(31761200-31761247)
chr2 (195-237)||(10849485-10849527)
chr2 (189-237)||(23054394-23054442)
chr2 (190-237)||(21214190-21214237)
chr2 (190-237)||(32667251-32667298)
chr2 (190-237)||(33985760-33985807)
chr2 (190-237)||(42768323-42768370)
chr2 (190-237)||(43195852-43195899)
[»] chr1 (14 HSPs)
chr1 (188-237)||(21638253-21638302)
chr1 (190-237)||(33879767-33879814)
chr1 (190-237)||(33964441-33964488)
chr1 (190-237)||(35926237-35926284)
chr1 (189-237)||(45403508-45403556)
chr1 (311-382)||(7074127-7074197)
chr1 (190-237)||(13959470-13959517)
chr1 (190-237)||(19481381-19481428)
chr1 (190-237)||(20735590-20735637)
chr1 (190-237)||(29273055-29273102)
chr1 (190-237)||(29273214-29273261)
chr1 (203-237)||(52923720-52923754)
chr1 (188-237)||(8520080-8520129)
chr1 (192-237)||(33342269-33342314)
[»] scaffold0054 (1 HSPs)
scaffold0054 (190-237)||(21252-21299)
[»] chr6 (13 HSPs)
chr6 (190-237)||(24558856-24558903)
chr6 (236-276)||(26809256-26809296)
chr6 (190-237)||(1744831-1744878)
chr6 (190-237)||(16876819-16876866)
chr6 (190-237)||(16876999-16877046)
chr6 (190-237)||(19291907-19291954)
chr6 (190-237)||(19712598-19712645)
chr6 (190-237)||(24055098-24055145)
chr6 (190-237)||(28149861-28149908)
chr6 (203-237)||(35236508-35236542)
chr6 (191-236)||(12124694-12124739)
chr6 (190-227)||(21089152-21089189)
chr6 (188-237)||(27914313-27914362)
[»] chr4 (21 HSPs)
chr4 (190-237)||(990615-990662)
chr4 (190-237)||(29113517-29113564)
chr4 (190-237)||(32987460-32987507)
chr4 (191-237)||(45426926-45426972)
chr4 (188-237)||(28395245-28395294)
chr4 (189-237)||(23018538-23018586)
chr4 (189-237)||(50858080-50858128)
chr4 (190-229)||(20545901-20545940)
chr4 (190-237)||(29669352-29669399)
chr4 (190-237)||(34205982-34206029)
chr4 (190-237)||(36558455-36558502)
chr4 (190-237)||(45427241-45427288)
chr4 (190-237)||(51470551-51470598)
chr4 (190-237)||(52214683-52214730)
chr4 (190-237)||(53740250-53740297)
chr4 (191-237)||(43972423-43972469)
chr4 (190-236)||(50858394-50858440)
chr4 (190-227)||(15664914-15664951)
chr4 (189-226)||(22865848-22865885)
chr4 (236-273)||(34206085-34206122)
chr4 (236-269)||(53739846-53739879)
[»] scaffold0989 (1 HSPs)
scaffold0989 (190-235)||(2936-2981)
[»] scaffold0060 (1 HSPs)
scaffold0060 (190-237)||(20608-20655)


Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 279 - 740
Target Start/End: Original strand, 50095175 - 50095636
Alignment:
Q  279 cacgttatgggcaggatttccaacaacaagcacaaccaatgaatattaatccaggaaatgaatatggcagtgcctaaggctgcctttaacattgagatta 378  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095175 cacgttatgggcaagatttccaacaacaagcacaaccaatgaatattgatccaggaaatgaatatggcagtgcctaaggctgcctttaacattgagatta 50095274  T
Q  379 atccagttagcttatgttcgtatattgttttatgtttgcttataacttataagtcattctttgatatatctaaatgattgtggcatcttctacggtaaat 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095275 atccagttagcttatgttcgtatattgttttatgtttgcttataacttataagtcattctttgatatatctaaatgattgtggcatcttctacggtaaat 50095374  T
Q  479 tgatgcatatttatgctctttgggatgacctaatgacttgtgaaattcactggaatttgttcagagtaactgtggtctgtggaatgtgatagaaggatga 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50095375 tgatgcatatttatgctctttgggatgacctaatgacttgtgaaattcactggaatttgttcagagtaactgtgatctgtggaatgtgatagaaggatga 50095474  T
Q  579 ggtttatgttcttaacattacttagacctgtatctgtaacccgacctgctaacatactggttacataacaacgtcttttgagtttgtgaattgttgaaat 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095475 ggtttatgttcttaacattacttagacctgtatctgtaacccgacctgctaacatactggttacataacaacgtcttttgagtttgtgaattgttgaaat 50095574  T
Q  679 aggccacccacaattttgcaccaattaaatatttactcaagctacattctggtttctttttg 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095575 aggccacccacaattttgcaccaattaaatatttactcaagctacattctggtttctttttg 50095636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 50094860 - 50095133
Alignment:
Q  8 agatatggctcgttgacagttatttctgttttctttcagccaggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaa 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50094860 agatatggctcgttgacagttatttttgttttctttcagccaggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaa 50094959  T
Q  108 aggagtcatacaaggcaaaaacccgtgtttgatagaaaaatattatttagatgaaattagtggctacactaattcacaagtgtgttgaaatttagggcct 207  Q
    | ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  50094960 atgagtcatacaaggcaaaaacccgtgtt-gatagaaaaatattatctagatgaaattagtggctactctaattcacaagtgtgttgaaatttagggtct 50095058  T
Q  208 aactcatcattacaaaaccaacttgtaagggactaactccaccccctcaaagccaacacaaagcaagccggcacg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095059 aactcatcattacaaaaccaacttgtaagggactaactccaccccctcaaagccaacacaaagcaagccggcacg 50095133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 25627908 - 25627956
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  25627908 gtgttggaatttggggcctaactcatccttacaaaaccaacttgtaagg 25627956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 22339857 - 22339809
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||  |||||||||||||| |||||||||| ||||||||||    
T  22339857 gtgttgaaattgggggcctaactcatccttacaaaaccgacttgtaagg 22339809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 51642416 - 51642464
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  51642416 gtgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 51642464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 9264075 - 9264122
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  9264075 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 9264122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 9264282 - 9264329
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  9264282 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 9264329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 22407430 - 22407477
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  22407430 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 22407477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 22407637 - 22407684
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  22407637 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 22407684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 44573754 - 44573707
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  44573754 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 44573707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 44574051 - 44574004
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  44574051 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 44574004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 47833642 - 47833689
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||| ||||| ||||||||||| |||||||||    
T  47833642 tgttgaaatttggggcctaaatcatccttacaaaaccagcttgtaagg 47833689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 50692438 - 50692391
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  50692438 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 50692391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 50692641 - 50692594
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  50692641 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 50692594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 51338392 - 51338439
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  51338392 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 51338439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 51642624 - 51642671
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  51642624 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 51642671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 9179239 - 9179201
Alignment:
Q  199 ttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  9179239 ttagggcctaactcatccttacaaaaccgacttgtaagg 9179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 13769285 - 13769327
Alignment:
Q  195 aaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||| |||||||||||||| ||||||||||| |||||||||    
T  13769285 aaatttggggcctaactcatccttacaaaaccagcttgtaagg 13769327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 4191113 - 4191158
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||| ||||||||||  |||||||||    
T  4191113 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 4191158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 4256034 - 4255989
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaa 235  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||    
T  4256034 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaa 4255989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 5440730 - 5440685
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||| |||| |||||||||| ||||||||||| |||||||||    
T  5440730 ttgaaattgagggtctaactcatccttacaaaaccagcttgtaagg 5440685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 21832187 - 21832224
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaacc 226  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  21832187 gtgttgaaatttggggcctaactcatccttacaaaacc 21832224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 50203845 - 50203882
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaacc 226  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  50203845 gtgttgaaatttggggcctaactcatccttacaaaacc 50203882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 35497406 - 35497317
Alignment:
Q  309 cacaaccaatgaatattaatccaggaaatgaatatggcagtgcctaaggctgcctttaacattgagattaatccagttagcttatgttcgt 399  Q
    ||||||| ||||||||| || |||||||||||| || ||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||    
T  35497406 cacaaccgatgaatattgattcaggaaatgaatctgacagtgcctaaggctg-ctttgacattgaaattaatccagttagcttctgttcgt 35497317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 18914150 - 18914197
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||    
T  18914150 tgttgaaatttggggcctaactcattcttacaaaaccaacttgtaagg 18914197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 40168848 - 40168894
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaag 236  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  40168848 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaag 40168894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 873684 - 873732
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  873684 gtgttgaaatttggggcctaactcatccttacaaaacctgcttgtaagg 873732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 13844128 - 13844092
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaacc 226  Q
    |||||||||||||||||||||||||| ||||||||||    
T  13844128 tgttgaaatttagggcctaactcatccttacaaaacc 13844092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 2908758 - 2908805
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  2908758 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 2908805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 3763021 - 3762974
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  3763021 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 3762974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 12965235 - 12965282
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  12965235 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 12965282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 13413699 - 13413652
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  13413699 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 13413652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 13843812 - 13843765
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  13843812 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 13843765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 15287168 - 15287121
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  15287168 tgttgaaattttgggtctaactcatcattacaaaaccggcttgtaagg 15287121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 18914357 - 18914404
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  18914357 tgttgaaatttggggcctaactcattcttacaaaaccagcttgtaagg 18914404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 24994184 - 24994137
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  24994184 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 24994137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 34457211 - 34457164
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  34457211 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 34457164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 34457418 - 34457371
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  34457418 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 34457371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38131879 - 38131832
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  38131879 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 38131832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 40169030 - 40169077
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  40169030 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 40169077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 24918274 - 24918229
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||| ||||||||||  |||||||||    
T  24918274 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 24918229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 26246037 - 26246004
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaac 225  Q
    |||||||||||||||||||||||| |||||||||    
T  26246037 ttgaaatttagggcctaactcatccttacaaaac 26246004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 28358026 - 28358071
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||| ||||||||||  |||||||||    
T  28358026 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 28358071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 20298504 - 20298552
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  20298504 gtgttgaaatttggggcctaactcatcattacaaaaccagcttgtaagg 20298552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 21085136 - 21085184
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  21085136 gtgttgaaatttggggcctaactcatcattacaaaaccagcttgtaagg 21085184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 36994023 - 36994063
Alignment:
Q  236 gggactaactccaccccctcaaagccaacacaaagcaagcc 276  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  36994023 gggactaaatccaccccctcaaagccaacacaaggcaagcc 36994063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 3183900 - 3183947
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  3183900 tgttgaaatttggggcctaactcatcgttacaaaaccggcttgtaagg 3183947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 7622009 - 7621962
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| |||||||| |||||| |||||    
T  7622009 tgttgaaatttggggcctaactcatccttacaaaatcaacttataagg 7621962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 10989023 - 10989070
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  10989023 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 10989070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 10989230 - 10989277
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  10989230 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 10989277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 16454624 - 16454671
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  16454624 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 16454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 18905971 - 18905924
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  18905971 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 18905924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 32931516 - 32931469
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  32931516 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 32931469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 36997281 - 36997234
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  36997281 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 36997234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 43599426 - 43599379
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  43599426 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 43599379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 33435794 - 33435748
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaag 236  Q
    ||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  33435794 tgttgaaatttggggtctaactcatccttacaaaaccgacttgtaag 33435748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 40754559 - 40754513
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaag 236  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  40754559 tgttgaaatttggggcctaacttatctttacaaaaccagcttgtaag 40754513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 30066097 - 30066060
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaacca 227  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30066097 tgttgaaatttggggcctaactcatccttacaaaacca 30066060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 34248372 - 34248335
Alignment:
Q  236 gggactaactccaccccctcaaagccaacacaaagcaa 273  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  34248372 gggactaaatccaccccctcaaagccaacacaaggcaa 34248335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 43599587 - 43599550
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaacca 227  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  43599587 tgttgaaatttggggcctaactcatccttacaaaacca 43599550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 23821665 - 23821712
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  23821665 tgttgaaatttggggcctaactcatccttacaaaaccaacttgtaagg 23821712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 258544 - 258501
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgt 233  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||    
T  258544 tgttgaaatttggggcctaactcatcatcacaaaaccagcttgt 258501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 1663593 - 1663640
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  1663593 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 1663640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 6783153 - 6783106
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  6783153 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 6783106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 8585206 - 8585159
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| ||| |||||||||| ||||||||||| |||||||||    
T  8585206 tgttgaaatttggggtctaactcatccttacaaaaccagcttgtaagg 8585159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 23396724 - 23396677
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  23396724 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 23396677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 41670948 - 41670901
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  41670948 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 41670901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 5775997 - 5775952
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaa 235  Q
    |||||||||||||||| ||||||||||| ||||||| | |||||||    
T  5775997 tgttgaaatttagggcttaactcatcatcacaaaactagcttgtaa 5775952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 29780260 - 29780215
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||||    
T  29780260 ttgaaatttggggcctaactcatccttataaaaccgacttgtaagg 29780215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 31761247 - 31761200
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31761247 tgttgaaatttggggcctaactcatccttacaaaaccaacttgtaagg 31761200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 10849485 - 10849527
Alignment:
Q  195 aaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  10849485 aaatttggggcctaactcatccttacaaaaccaacttgtaagg 10849527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 23054442 - 23054394
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  23054442 gtgttgaaatttggggcctaactcatccttacaaaaccgtcttgtaagg 23054394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 21214190 - 21214237
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  21214190 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 21214237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 32667298 - 32667251
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  32667298 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 32667251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 33985760 - 33985807
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  33985760 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 33985807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 42768323 - 42768370
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  42768323 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 42768370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 43195899 - 43195852
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  43195899 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 43195852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 21638253 - 21638302
Alignment:
Q  188 tgtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  21638253 tgtgttgaaatttggggcctaactcatccttacaaaaccatcttgtaagg 21638302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 33879767 - 33879814
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  33879767 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaagg 33879814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 33964488 - 33964441
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  33964488 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaagg 33964441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 35926237 - 35926284
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  35926237 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaagg 35926284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 45403556 - 45403508
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  45403556 gtgttgaaatttgaggcctaactcatccttacaaaaccagcttgtaagg 45403508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 7074127 - 7074197
Alignment:
Q  311 caaccaatgaatattaatccaggaaatgaatatggcagtgcctaaggctgcctttaacattgagattaatcc 382  Q
    ||||| ||||||||| || |||||||||||| || |||||||||||| |||| |||| ||||| ||||||||    
T  7074127 caacctatgaatattgattcaggaaatgaatctgacagtgcctaaggttgcc-ttaatattgatattaatcc 7074197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 13959517 - 13959470
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  13959517 tgttgaaatttggggcctaactcatccttaaaaaaccagcttgtaagg 13959470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 19481381 - 19481428
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  19481381 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 19481428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 20735637 - 20735590
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  20735637 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 20735590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 29273055 - 29273102
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  29273055 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 29273102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 29273214 - 29273261
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  29273214 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 29273261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 52923720 - 52923754
Alignment:
Q  203 ggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||||||||||||||    
T  52923720 ggcctaactaatcattacaaaaccaacttgtaagg 52923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 8520080 - 8520129
Alignment:
Q  188 tgtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||| ||| |||||||||| ||||||||||  |||||||||    
T  8520080 tgtgttgaaatttggggtctaactcatctttacaaaaccggcttgtaagg 8520129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 33342269 - 33342314
Alignment:
Q  192 ttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||| |||||||||| ||||||||||  |||||||||    
T  33342269 ttgaaatttagggtctaactcatccttacaaaaccggcttgtaagg 33342314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 21252 - 21299
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||    
T  21252 tgttgaaatttgaggcctaactcatccttacaaaaccaacttgtaagg 21299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 24558903 - 24558856
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  24558903 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaagg 24558856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 26809256 - 26809296
Alignment:
Q  236 gggactaactccaccccctcaaagccaacacaaagcaagcc 276  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  26809256 gggactaaatccaccccctcaaagccaacacaaggcaagcc 26809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 1744831 - 1744878
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  1744831 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 1744878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 16876819 - 16876866
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  16876819 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 16876866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 16876999 - 16877046
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  16876999 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 16877046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 19291907 - 19291954
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| | |||||||||||| ||||||||||||||| |||||    
T  19291907 tgttgaaatttggagcctaactcatccttacaaaaccaacttataagg 19291954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 19712598 - 19712645
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||| ||||| |||||||||||||| ||||||||||| |||||||||    
T  19712598 tgttgtaatttggggcctaactcatccttacaaaaccagcttgtaagg 19712645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 24055098 - 24055145
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  24055098 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 24055145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 28149908 - 28149861
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  28149908 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 28149861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 35236508 - 35236542
Alignment:
Q  203 ggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||| |||||||||||||||||||||||||    
T  35236508 ggcctaactaatcattacaaaaccaacttgtaagg 35236542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 12124694 - 12124739
Alignment:
Q  191 gttgaaatttagggcctaactcatcattacaaaaccaacttgtaag 236  Q
    |||||||||| |||||||||||||| |||||||| || ||||||||    
T  12124694 gttgaaatttggggcctaactcatccttacaaaatcagcttgtaag 12124739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 21089152 - 21089189
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaacca 227  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  21089152 tgttgaaatttggggcctaactcatccttacaaaacca 21089189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 27914313 - 27914362
Alignment:
Q  188 tgtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||| ||||||| |||||||||||||| ||||||||||  |||||||||    
T  27914313 tgtgtagaaatttggggcctaactcatccttacaaaaccggcttgtaagg 27914362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 990662 - 990615
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  990662 tgttgaaatttggggcctaactcatccttacaaaaccgacttgtaagg 990615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 29113564 - 29113517
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  29113564 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaagg 29113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 32987460 - 32987507
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  32987460 tgttgaaatttagggcctaaatcatccttacaaaaccgacttgtaagg 32987507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 45426926 - 45426972
Alignment:
Q  191 gttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||    
T  45426926 gttgaaatttggggcctaactcatccttacaaaaccgacttgtaagg 45426972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 28395294 - 28395245
Alignment:
Q  188 tgtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  28395294 tgtgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 28395245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 23018586 - 23018538
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  23018586 gtgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 23018538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 50858128 - 50858080
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  50858128 gtgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 50858080  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 20545901 - 20545940
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaac 229  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  20545901 tgttgaaatttggggcctaactcatcattacaaaatcaac 20545940  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 29669352 - 29669399
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  29669352 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 29669399  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 34205982 - 34206029
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| || ||||||||||| ||||||||||| |||||||||    
T  34205982 tgttgaaatttgggacctaactcatccttacaaaaccagcttgtaagg 34206029  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 36558455 - 36558502
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  36558455 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 36558502  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 45427241 - 45427288
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  45427241 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 45427288  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 51470598 - 51470551
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  51470598 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 51470551  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 52214730 - 52214683
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  52214730 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 52214683  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 53740297 - 53740250
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  53740297 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 53740250  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 43972469 - 43972423
Alignment:
Q  191 gttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    |||||||||| |||||||||||||| ||||||||||  |||||||||    
T  43972469 gttgaaatttggggcctaactcatccttacaaaaccggcttgtaagg 43972423  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 50858440 - 50858394
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaag 236  Q
    ||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  50858440 tgttgaaatttggggcctaactcatccttacaaaaccggcttgtaag 50858394  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 15664951 - 15664914
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaacca 227  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  15664951 tgttgaaatttggggcctaactcatcgttacaaaacca 15664914  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 22865885 - 22865848
Alignment:
Q  189 gtgttgaaatttagggcctaactcatcattacaaaacc 226  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  22865885 gtgttgaaatttagggtctaactcatccttacaaaacc 22865848  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 34206085 - 34206122
Alignment:
Q  236 gggactaactccaccccctcaaagccaacacaaagcaa 273  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  34206085 gggactaaatccaccccctcaaagccaacacaaggcaa 34206122  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 53739879 - 53739846
Alignment:
Q  236 gggactaactccaccccctcaaagccaacacaaa 269  Q
    |||||||| |||||||||||||||||||||||||    
T  53739879 gggactaaatccaccccctcaaagccaacacaaa 53739846  T

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Target: scaffold0989 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 2936 - 2981
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaa 235  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||    
T  2936 tgttgaaatttggggcctaactcatccttacaaaaccagcttgtaa 2981  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 20655 - 20608
Alignment:
Q  190 tgttgaaatttagggcctaactcatcattacaaaaccaacttgtaagg 237  Q
    ||||| ||||| |||||||||||||| ||||||||||| |||||||||    
T  20655 tgttgtaatttggggcctaactcatccttacaaaaccagcttgtaagg 20608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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