View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404-Insertion-5 (Length: 341)
Name: NF5404-Insertion-5
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 9161958 - 9161627
Alignment:
| Q |
8 |
atgatgagtttggtatcaattatggtgagttgttgaccatttatgagtttgccattctcgacaaaagagattcagagtgttttattggagatggagatgg |
107 |
Q |
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| T |
9161958 |
atgatgagtttggtatcaattatggtgagttgttgaccattt--gagtttgccattctcgacaaaagagattcagagtgttttattggagatggagatgg |
9161861 |
T |
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| Q |
108 |
tgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgnnnnnnngcatgcagtttctacccctatacccacagtctctaatagtgcaa |
207 |
Q |
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| T |
9161860 |
tgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgaaaaaaagcatgcagtttctacccctatacccacagtctctaatagtgcaa |
9161761 |
T |
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| Q |
208 |
acctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaatagacatagaaaagaaatctgcatgcaactattgtgatggaaaa |
307 |
Q |
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| T |
9161760 |
acctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaatagacatagaaaagaaatctgcatgcaactattgtgatggaaaa |
9161661 |
T |
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| Q |
308 |
tgaagtatgataatgcaactaattctatgtgtgt |
341 |
Q |
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| T |
9161660 |
tgaagtatgataatgcaactagttctatgtgtgt |
9161627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 9149078 - 9149001
Alignment:
| Q |
78 |
ttcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttg |
156 |
Q |
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| T |
9149078 |
ttcagagtgttgtattagacacggagatggtgttacactaatcca-ttgcatagacaacttataccagttaattccttg |
9149001 |
T |
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