View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404-Insertion-6 (Length: 282)
Name: NF5404-Insertion-6
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 52384215 - 52384490
Alignment:
| Q |
6 |
cattttttaaatcgttgtttgaagccaataaatgtaaatgacttgcacgatgttataatcgtctgttgcctgtatattctcttgcttgtatgcatatcta |
105 |
Q |
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| T |
52384215 |
cattttttaaatcgttgtttgaagccaataaatgtaaatgacttgcacgatgttataatcgtctgttgcttgtatattctcttgcttgtatgcatatcta |
52384314 |
T |
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| Q |
106 |
ttttcttttaggtagaagtacttctgttcaaattaccannnnnnntgcacttatctatctcttaataatgaaaactcttttgtatatttcttcaggtaag |
205 |
Q |
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| T |
52384315 |
ttttcttttaggtagaagtacttctgttcaaattacca-ggggggtgcacttatctatctcttaataatgaaaactcttttgtatatttcttcaggtaag |
52384413 |
T |
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| Q |
206 |
gtcaaagatttctacttttgggggatttggtgggcccactgaagttacttgtggtggtaatgcgttgaaattctatg |
282 |
Q |
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| T |
52384414 |
gtcaaagatttctacttttgggggatttggtgggcccactgaagttacttgtggtggtaatgcgttgaaattctatg |
52384490 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 17383680 - 17383592
Alignment:
| Q |
193 |
ttcttcaggtaaggtcaaagatttctacttttgggggatttggtgggcccactgaagttacttgtggtggtaatgcgttgaaattctat |
281 |
Q |
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| T |
17383680 |
ttctccaggtaaggtcgaagatttctacttttggcggattcggtgggcctactgaagttacttgtggtggtaatgctttgaaattctat |
17383592 |
T |
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