View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5404_high_14 (Length: 420)
Name: NF5404_high_14
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_14 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 5312861 - 5312472
Alignment:
| Q |
11 |
cacagatgagaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5312861 |
cacagatgagaagaggcactaaaccgggaagagcaccaataccaacaacaccaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgt |
5312762 |
T |
|
| Q |
111 |
tatatgaaaccaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5312761 |
tatatgaaaccaccatggaaattctcccattctatatgcatcaattgcaatgtaattcaaaatttcgccggttgagtgtcttgtccttgccatgcttgaa |
5312662 |
T |
|
| Q |
211 |
agctttagctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5312661 |
agctttagctgctttcgataaactgccaccatcaaagctgatctcattttcattcctgacctccttgag--aaaaaaccaatgtcgttgagacagagact |
5312564 |
T |
|
| Q |
311 |
cgactaatttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5312563 |
cgaccaatttggtgagaatcagaaaaccaactattgaaagaccttgtttgagatctgcctcagttctatttgcgtagttaacaaaagcatag |
5312472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 5305643 - 5305260
Alignment:
| Q |
19 |
agaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaa |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5305643 |
agaagagggactaaaccaggaagagcaccaatacctacaacaccaaaaaggataacaatggaaagaacaagttgcaatgcacaagtccatgttatatgaa |
5305544 |
T |
|
| Q |
119 |
accaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttag |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||| |
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|
| T |
5305543 |
accaccatgggaattctcccattctatatgcatcaactacaatgtaattcacaatttcgccggccaagtgtcttgttcttgccgggctagaaagctttag |
5305444 |
T |
|
| Q |
219 |
ctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagactcgactaat |
318 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| | | | |
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|
| T |
5305443 |
ctgcttttgataaactgctgccatcaaagctgatctcattttcattcctgacctccttgagttgaaaaaccaatgtctctgagacaaagactccaaaact |
5305344 |
T |
|
| Q |
319 |
ttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5305343 |
ttgttgagaatcagaaaacaaactatggtaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
5305260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 5283960 - 5284342
Alignment:
| Q |
19 |
agaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaa |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||| ||||| ||| | |||| ||| ||||| ||||||| |
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|
| T |
5283960 |
agaagagggactaaacctggaagagcaccaatacctacaacaccaaaaagaataaaaatagacaaaacaatttgaagtgcagaagcccatgccatatgaa |
5284059 |
T |
|
| Q |
119 |
accaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |
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|
| T |
5284060 |
accaccatggaaattctcccattctatatgcatcaactacaatgtaattcacaatttcaccggccgagtgtcttgtccttgccgagctagaaagctttag |
5284159 |
T |
|
| Q |
219 |
ctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagactcgactaat |
318 |
Q |
| |
|
|||||| |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
5284160 |
ttgcttttgataaattgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgtctttgagacagagaatcaactaat |
5284259 |
T |
|
| Q |
319 |
ttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcata |
401 |
Q |
| |
|
||||| ||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5284260 |
ttggttagaattaaaataccaactatggaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcata |
5284342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 14950774 - 14951158
Alignment:
| Q |
19 |
agaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaa |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||| |||||| | | |||| || ||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
14950774 |
agaagagggactaaaccaggaagagcaccaataccaacaacaaaaaaaaggacaccaatagaaagaacaagttgcaatacagaagtccatgccatatgaa |
14950873 |
T |
|
| Q |
119 |
accaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| || |||||||| ||||||||||||||| |
|
|
| T |
14950874 |
accaccatggaaattctcccattctataagcatcaactgcaatgtaattcacaatttctccggccgagtgcctcatccttgccgagcttgaaagctttag |
14950973 |
T |
|
| Q |
219 |
ctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctc-cttgagttaaaaaaccaatgtcgttgagacagagactcgactaa |
317 |
Q |
| |
|
||||||| |||||||||| ||||| | | ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| | | |
|
|
| T |
14950974 |
ctgcttttgataaactgctaccattagagctgatctcattttcatacctgacctcttttgagttaaaaaaccaatgtctttgagacagagactcaaagac |
14951073 |
T |
|
| Q |
318 |
tttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
||| |||| || || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14951074 |
tttagtgacaaccaaaaaaccaactatggaaagaccttgtttgagatcttcctcagttctatttgagtagttaacaaaagcatag |
14951158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 15124892 - 15124509
Alignment:
| Q |
19 |
agaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaa |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||| |||| | |||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
15124892 |
agaagaggcactaaaccaggaagagcaccaataccaacaacaataaagagaacactggtggaaagaaaaagttgcaatgcagaagtccatgttatatgaa |
15124793 |
T |
|
| Q |
119 |
accaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||| ||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
15124792 |
accaccatggaaattctcccattctataagaatcaactgcaatgtaattcacaatttctccgaccgagtgtcttttccttgccgagctagaaagctttag |
15124693 |
T |
|
| Q |
219 |
ctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagactcgactaat |
318 |
Q |
| |
|
||||||| |||||||||| ||||| | | ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||| | | | |
|
|
| T |
15124692 |
ctgcttttgataaactgctaccattagagctgatctcattttcatacctgacctccttgagttaaaaaaccaatgtctttgagataccgactcaaagact |
15124593 |
T |
|
| Q |
319 |
ttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
|| |||| || || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124592 |
ttagtgacaaccaaaaaaccaactatggaaagaccttgtttgagatcttcctcagttctatttgagtagttaacaaaagcatag |
15124509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 5291455 - 5291838
Alignment:
| Q |
19 |
agaagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaa |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| |||||| |||| || | | |||||| |||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
5291455 |
agaagagggactaaaccaggaagagcaccaacaccgacaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaa |
5291554 |
T |
|
| Q |
119 |
accaccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttag |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
5291555 |
accaccatggaaattctcccattctgtatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaa |
5291654 |
T |
|
| Q |
219 |
ctgctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagactcgactaat |
318 |
Q |
| |
|
||||||||| ||||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| | | | |
|
|
| T |
5291655 |
ctgctttcggtaaaccgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaact |
5291754 |
T |
|
| Q |
319 |
ttggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5291755 |
ttggtgagaatcaaaataccaactatggaaagaccttgtttgagatctgcctcggttctatttgagtagttaacaaaagcatag |
5291838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 402
Target Start/End: Original strand, 31527459 - 31527840
Alignment:
| Q |
21 |
aagaggcactaaaccgggaagagcaccaataccaacaacaacaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaaac |
120 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
31527459 |
aagagggactaaaccaggaagagcaccaataccaacaacaccgaaaaggacagcaatggacagaacaagttgtagtatacaagtccatgttatatgaaac |
31527558 |
T |
|
| Q |
121 |
caccatggaaattctcccattctatatgcatcaattgcaatgtaattcacaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttagct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| || || || ||| ||||||||||||| |
|
|
| T |
31527559 |
caccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtcttatctttcccgagctagaaagctttagct |
31527658 |
T |
|
| Q |
221 |
gctttcgataaactgccaccatcaaaactgatatcattttcattcctgacctccttgagttaaaaaaccaatgtcgttgagacagagactcgactaattt |
320 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||| || || | ||||||||||||||| |
|
|
| T |
31527659 |
gcttctcataaactgccaccatcagagctgatctcattttcattcctaacctccttgagttaaaaaaccaatgtctctgggaaaaagactcgactaattt |
31527758 |
T |
|
| Q |
321 |
ggtgagaatcagaaaaccaactattaaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatag |
402 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | |||||| | |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31527759 |
ggtgagaatcagaaaaccaactatggaaagaccttctctgagatttccctcggttctacttgagtagttaacaaaagcatag |
31527840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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