View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_16 (Length: 418)
Name: NF5404_high_16
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 42 - 418
Target Start/End: Original strand, 4271694 - 4272070
Alignment:
| Q |
42 |
aagattgcgaggatgatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa |
141 |
Q |
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| T |
4271694 |
aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa |
4271793 |
T |
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| Q |
142 |
gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcc |
241 |
Q |
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| T |
4271794 |
gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgatattcatggaattggttcc |
4271893 |
T |
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| Q |
242 |
tccaagtatagnnnnnnnaactcgtaccattattgtacttaatcgagattcagaaaaagagacaatgggattaagctgaatctggattggatttgggttt |
341 |
Q |
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| T |
4271894 |
tccaagtatagtttttttaactcgtaccattgctgtacttaatcgagattcaaaaaaagagacaatgggattaagctgaatctggattggatttgggttt |
4271993 |
T |
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| Q |
342 |
aagctgaataattttctatcgcaacttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactcttt |
418 |
Q |
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| T |
4271994 |
aagctgaatagttttctattgcagcttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactcttt |
4272070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 42346596 - 42346798
Alignment:
| Q |
50 |
gaggatgatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataat- |
148 |
Q |
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| T |
42346596 |
gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg |
42346695 |
T |
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| Q |
149 |
--tggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcctccaa |
246 |
Q |
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| T |
42346696 |
tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttgacattcatggaattgggtcctccaa |
42346795 |
T |
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| Q |
247 |
gta |
249 |
Q |
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| T |
42346796 |
gta |
42346798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 12185655 - 12185607
Alignment:
| Q |
369 |
aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctt |
417 |
Q |
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| T |
12185655 |
aacagttccaccagcaatgaattttcagcaaagtgtctatggaactctt |
12185607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 12430083 - 12430035
Alignment:
| Q |
369 |
aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctt |
417 |
Q |
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| T |
12430083 |
aacagttccaccagcaatgaattttcagcaaagtgtctatggaactctt |
12430035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 12174143 - 12174097
Alignment:
| Q |
369 |
aacagttccaccaacaatgatttttcagcaaagtgtctatggaactc |
415 |
Q |
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| T |
12174143 |
aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc |
12174097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 12418571 - 12418525
Alignment:
| Q |
369 |
aacagttccaccaacaatgatttttcagcaaagtgtctatggaactc |
415 |
Q |
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| T |
12418571 |
aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc |
12418525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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