View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_17 (Length: 413)
Name: NF5404_high_17
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 31828014 - 31828146
Alignment:
| Q |
164 |
taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct |
263 |
Q |
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| T |
31828014 |
taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct |
31828113 |
T |
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| Q |
264 |
atctctttgagtaaacacataaaaatcagaacc |
296 |
Q |
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| T |
31828114 |
atctctttgagtaaacacataaaaatcagaacc |
31828146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 31827872 - 31827955
Alignment:
| Q |
23 |
aacaaaacaagttcctaagcttggttcggacattggatttgcagttaaagtcctctagagagagaccaaaactttcaaattcca |
106 |
Q |
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| T |
31827872 |
aacaaaacaagttcctaagcttggttcggacattggatttgcagttaaagtcctctagagagagaccaaaactttcaaattcca |
31827955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 31828180 - 31828244
Alignment:
| Q |
338 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctct |
402 |
Q |
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| T |
31828180 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctct |
31828244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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