View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_18 (Length: 406)
Name: NF5404_high_18
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 48171856 - 48171462
Alignment:
| Q |
1 |
ttctgcaaatccacagtccaattatcattcttttctaccaaatcctccacaggcacatcaatttgagagaaatcaccaatcacaacttcatcttctggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171856 |
ttctgcaaatccacagtccaattatcattcttttctaccaaatcctccacaggcacatcaatttgagagaaatcaccaatcacaacttcatcttctggat |
48171757 |
T |
|
| Q |
101 |
tcccacccaccaactcttggttcagtaaatcctcccacacagcatcgcccaaattactctcattaccagttggaactgaactcaatgcagtgtagtcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171756 |
tcccacccaccaactcttggttcagtaaatcctcccacacagcatcacccaaattactctcattaccagttggaactgaactcaatgcagtgtagtcctt |
48171657 |
T |
|
| Q |
201 |
aacttcactgcttgattcattatcataagcacttaacagtgtctccatctcagactcaatagtagtcaaaccctcttgctgttcttgacaagagtaatcg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171656 |
aacttcactgcttgattcattatcataagcacttaacagtgtctccatctcagactcaatagtagtcaaaccctcttgctgttcttgacaagagtaatca |
48171557 |
T |
|
| Q |
301 |
accacagattcaattggcacagcccttatagctccagaatcaatttgcaaattctccaaactcgaattagctgtgagcctccgttttcgcttcat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
48171556 |
accacagattcaattggcacagcccttatagctccagaatcattttgcaaattctccaaactcaaactagctgtgagcctccgttttcgcttcat |
48171462 |
T |
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