View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_21 (Length: 384)

Name: NF5404_high_21
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_21
NF5404_high_21
[»] chr4 (16 HSPs)
chr4 (9-366)||(35969928-35970285)
chr4 (40-365)||(35974327-35974651)
chr4 (72-345)||(36634109-36634383)
chr4 (252-337)||(36641580-36641665)
chr4 (223-366)||(36663912-36664056)
chr4 (72-185)||(36641430-36641542)
chr4 (24-87)||(35970321-35970383)
chr4 (279-366)||(36632048-36632135)
chr4 (33-123)||(36911673-36911761)
chr4 (76-182)||(36663768-36663873)
chr4 (275-364)||(36661371-36661460)
chr4 (24-79)||(35970275-35970330)
chr4 (276-366)||(18361845-18361935)
chr4 (276-366)||(36600992-36601082)
chr4 (283-367)||(29678684-29678768)
chr4 (33-70)||(35970389-35970426)
[»] chr2 (1 HSPs)
chr2 (107-139)||(43429071-43429103)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 35970285 - 35969928
Alignment:
Q  9 ctaaataagtactactatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35970285 ctaaataagtactactatatcacaacaatatagtatccgagacatactctgagatggtcgctaaataagtatatcacaatatggcttcaaaattggagac 35970186  T
Q  109 tatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970185 tatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattc 35970086  T
Q  209 tttttcagtcacttatctaatatcttaaaagaaaggcttgcaaagaagacattgtaacttgtaggaaatatgagaactcttcactgcccattatctagaa 308  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970085 tttttcagtcacttatctaatatcttaaaagaaaggcccgcaaataagacattgtaacttgtaggaaatatgagaactcttcactgcccattatctagaa 35969986  T
Q  309 gtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgatttatc 366  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35969985 gtggagagtcgctgttatgttggtgcttccccaccttctcttcattggatgatttatc 35969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 365
Target Start/End: Complemental strand, 35974651 - 35974327
Alignment:
Q  40 agtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaa 139  Q
    ||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35974651 agtatccaagacatactctgagatggtcgctaattaattatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaa 35974552  T
Q  140 tgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattctttttcagtcacttatctaatatcttaaaag 239  Q
    ||||||| || || |||||||||| |||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||||||||    
T  35974551 tgaagagatcatgcgatagaccaaatgcttggcaaatcaaacatgtagtaaagtcatgaaaattgatt-tttttcagtcacttatctaatatcttaaaag 35974453  T
Q  240 aaaggcttgcaaagaagacattgtaacttgtaggaaatatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccc 339  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  35974452 aaaggctcgcaaagaagacattgtaacttgtaggaaatatgagaactcttcactgcccattatctagaagtggagagtcggtgataggttggtgcttccc 35974353  T
Q  340 caccttctcttgattggatgatttat 365  Q
    |||||| |||| ||||||||||||||    
T  35974352 caccttatcttcattggatgatttat 35974327  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 72 - 345
Target Start/End: Original strand, 36634109 - 36634383
Alignment:
Q  72 aataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttgg 171  Q
    ||||||||||| ||||| |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||| || ||||||  ||||| |||||      
T  36634109 aataagtatattacaatttggctttaaaattggagactaccagttagatgaa-ctcatggacctcaaatgaagagttcatgtgatcaaccaaatgcttct 36634207  T
Q  172 caaatcaaacatgt---agtaaagtcagaaaatttgattctttttcagtcacttatctaatatcttaaaagaaaggcttgcaaagaagacattgtaactt 268  Q
    ||||||||||||||   |||||||||||  ||  ||| | ||||||||| |||||||| || |||||||||||||| |  || ||||| ||| |||| ||    
T  36634208 caaatcaaacatgtttcagtaaagtcagccaaactga-tatttttcagttacttatctgatgtcttaaaagaaaggttcacagagaaggcatcgtaattt 36634306  T
Q  269 gtaggaaatatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccacctt 345  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||  |||||||    
T  36634307 gtatgaaatatgagaactcttcactgctcattatctagaagtggagagttgttgttaggttggtgcttatccacctt 36634383  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 36641580 - 36641665
Alignment:
Q  252 agaagacattgtaacttgtaggaaatatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttc 337  Q
    ||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  36641580 agaaggcatcgtaatttgtatgaaatatgagaactcttcactgcccattatctagaagtggagagtcggtgttagattggtgcttc 36641665  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 36663912 - 36664056
Alignment:
Q  223 atctaatatcttaaaagaaaggcttgcaaagaagacattgtaacttgta-ggaaatatgagaactcttcactgcccattatctagaagtggagagtcgct 321  Q
    |||| ||||||||||||||||| |  ||||| || |||||||||  | | || |||||||||||||||||||| ||||||||||||||||| |||||| |    
T  36663912 atctgatatcttaaaagaaaggttcacaaaggaggcattgtaacaagaaaggcaatatgagaactcttcactggccattatctagaagtggtgagtcggt 36664011  T
Q  322 gttatgttggtgcttccccaccttctcttgattggatgatttatc 366  Q
    |||| ||||| ||||| ||||||  |||| ||| |||||||||||    
T  36664012 gttaggttggcgcttctccacctcatcttcatttgatgatttatc 36664056  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 36641430 - 36641542
Alignment:
Q  72 aataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttgg 171  Q
    ||||||||||| ||||| |||||| |||||||||||||| ||| ||||| ||  ||||||||||||||||||||| || |||||| |||||| ||||||     
T  36641430 aataagtatattacaatttggctttaaaattggagactaccagttagataaag-tcatggacctcaaatgaagagttcatgtgatcgaccaaatgcttgt 36641528  T
Q  172 caaatcaaacatgt 185  Q
    ||| ||||||||||    
T  36641529 caagtcaaacatgt 36641542  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 35970383 - 35970321
Alignment:
Q  24 tatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaa 87  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  35970383 tatatcacaacaatata-tatccgagccatactctgagatggtcgctaaataagtatatcacaa 35970321  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 36632135 - 36632048
Alignment:
Q  279 tgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgatttatc 366  Q
    ||||||||||||| ||| ||||||||||||||| ||||| | ||||| ||||||||||| ||||||| |||| ||| |||||||||||    
T  36632135 tgagaactcttcaatgcacattatctagaagtgaagagttgatgttaggttggtgcttctccaccttatcttcatttgatgatttatc 36632048  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 36911761 - 36911673
Alignment:
Q  33 acaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagactatcagctagatgaa 123  Q
    ||||| |||||||| | ||||||||||||||||| ||| ||||||||||  ||||| |||||| |||||||||||| ||||||||||||||    
T  36911761 acaatttagtatcccatacatactctgagatggtagctaaataagtata--acaatttggctttaaaattggagaccatcagctagatgaa 36911673  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 36663768 - 36663873
Alignment:
Q  76 agtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaa 175  Q
    ||||||| ||||| | |||| |||||||||||||| || ||||||||| |||||||||||||||||||||  || |||||||||||||   |||| ||||    
T  36663768 agtatattacaatttcgctttaaaattggagactaccaactagatgaa-ctcatggacctcaaatgaagaactcatgtgatagaccaaacacttgtcaaa 36663866  T
Q  176 tcaaaca 182  Q
    |||||||    
T  36663867 tcaaaca 36663873  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 36661371 - 36661460
Alignment:
Q  275 aatatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgattta 364  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||| ||||| | ||||  |||| ||| |||||||||    
T  36661371 aatatgagaactcttcactggccattatctagaagtggagagtaggtgttaggttggcgcttctcgacctcatctttatttgatgattta 36661460  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 35970330 - 35970275
Alignment:
Q  24 tatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagta 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  35970330 tatatcacaacaatatagtatcccagacatactctgagatggttgctaaataagta 35970275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 18361935 - 18361845
Alignment:
Q  276 atatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgatttatc 366  Q
    |||||| |||| |||||||||||||||| |||||||||||||  |||| | ||||| ||||| | ||||| |||| ||| |||||||||||    
T  18361935 atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatc 18361845  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 36600992 - 36601082
Alignment:
Q  276 atatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgatttatc 366  Q
    |||||| |||| |||||||||||||||| |||||||||||||  |||| | ||||| ||||| | ||||| |||| ||| |||||||||||    
T  36600992 atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatc 36601082  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 29678768 - 29678684
Alignment:
Q  283 aactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttgattggatgatttatct 367  Q
    ||||||||||||||| |||||||||||| ||||||   ||||| ||||||||||| || |||| |||| ||| || |||||||||    
T  29678768 aactcttcactgccctttatctagaagttgagagtttgtgttaggttggtgcttctccgccttatcttcatttgacgatttatct 29678684  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 35970426 - 35970389
Alignment:
Q  33 acaatatagtatccgagacatactctgagatggtcgct 70  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  35970426 acaatatagtatctgagacatactctaagatggtcgct 35970389  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 43429071 - 43429103
Alignment:
Q  107 actatcagctagatgaatctcatggacctcaaa 139  Q
    |||| ||||||||||||||||||||||||||||    
T  43429071 actaccagctagatgaatctcatggacctcaaa 43429103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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