View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_24 (Length: 357)

Name: NF5404_high_24
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_24
NF5404_high_24
[»] chr4 (18 HSPs)
chr4 (13-343)||(5551096-5551428)
chr4 (24-331)||(5850005-5850330)
chr4 (13-343)||(5854970-5855316)
chr4 (13-216)||(5562778-5562981)
chr4 (13-232)||(5611578-5611797)
chr4 (13-331)||(5891216-5891551)
chr4 (13-233)||(5897068-5897288)
chr4 (13-233)||(5888205-5888425)
chr4 (32-228)||(5556978-5557177)
chr4 (32-232)||(5603458-5603660)
chr4 (228-282)||(5562690-5562744)
chr4 (32-156)||(5573147-5573271)
chr4 (32-156)||(5585354-5585478)
chr4 (287-343)||(5888435-5888491)
chr4 (232-283)||(5556876-5556927)
chr4 (290-343)||(5897301-5897354)
chr4 (228-279)||(5609473-5609529)
chr4 (22-118)||(5856221-5856317)
[»] chr8 (1 HSPs)
chr8 (13-204)||(1481230-1481421)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 5551428 - 5551096
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5551428 atcatcatctgtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccaaaggatgtattttg 5551329  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5551328 aatatgcaactgatagatgacagacatacagaactttaaggtggtgataacattattgatagagattgtgataattattgacataatgttttctatttcc 5551229  T
Q  213 atttaagttgtactttg--tgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaaagtgtcattgagaattatagtgatagtg 310  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5551228 atttaagttgtactttgtgtgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaaagtgtcattgagaattatagtgatagtg 5551129  T
Q  311 tttcattcaaaatagaaatataaaagttgattt 343  Q
    |||||||||||||||||||||||||||||||||    
T  5551128 tttcattcaaaatagaaatataaaagttgattt 5551096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 5850005 - 5850330
Alignment:
Q  24 tcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatgcaact 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  5850005 tcccctcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgttggatcttccgaagaatgtattttgaatatgcaact 5850104  T
Q  124 gatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttccatttaagttgt 223  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||| |||| |    ||||||||||||| ||||||||||||    
T  5850105 gatagaggacagacatacagaattttaaggtggtgatagcattagtgctacggattgtgataaatattaaatcgatgttttctattttcatttaagttgt 5850204  T
Q  224 actt----------------tgtgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaa--agtgtcattgagaattatagtga 305  Q
    | ||                |||||||||||||||||||||||||||||  |||||||||| |||||||||||||  |||||||||||||||||| || |    
T  5850205 attttgtgtttactcctttgtgtgtgatgatatgtattataactttgaatgaacattctataaagtttaaataaaacagtgtcattgagaattatggtaa 5850304  T
Q  306 tagtgtttcattcaaaatagaaatat 331  Q
    ||||||||||||||| ||| ||||||    
T  5850305 tagtgtttcattcaagatacaaatat 5850330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 5854970 - 5855316
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||||| ||||||  |||||||||||||  |||||||||| | |||||||||| || ||| |||||| ||||| ||||||||||||||||||||||||    
T  5854970 atcatcattggtcccaccttgttttggaagcgatggagagtatgttattggaaacgcgtaga-aaaattatctgttggatcttccgaaggatgtattttg 5855068  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||| ||||||||||| |||| | |||||||||| ||| |      
T  5855069 aatatgcaactgatagaggacagacatacagaattttaagggtgtgataacatcagtgctagggattgtgataactattaaaataatgttttgtatgtaa 5855168  T
Q  213 atttaagttgtactt----------------tgtgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaa--agtgtcattgag 294  Q
    |||||||||||||||                |||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||  | ||||||||||    
T  5855169 atttaagttgtactttgtgtttactcatttatgtgtggtgatatgtattataac-ttgaagaaacattctataaagtttaaataaaacattgtcattgag 5855267  T
Q  295 aattatagtgatagtgtttcattcaaaatagaaatataaaagttgattt 343  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  5855268 aattataatgatagtgtttcattcaaaatagaaatatataagttgattt 5855316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 5562981 - 5562778
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||| ||||  |||||| ||||||    
T  5562981 atcatcgttggtcccctcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctctgtttgattttccagaggatgcattttg 5562882  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||| ||||||||||||||||||    
T  5562881 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgctaagaattgtgataattattgaaataatgttttctatttcc 5562782  T
Q  213 attt 216  Q
    ||||    
T  5562781 attt 5562778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 5611797 - 5611578
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||| || || |||||| ||||||    
T  5611797 atcatcatcggtcctcttttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctctgtttgatttttcggaggatgcattttg 5611698  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  5611697 aatatgtaactgatagaggacagacatacacaattttaaggtggtcataagattagtgctagagattgtgataattatttaaataatgttttcaatttcc 5611598  T
Q  213 atttaagttgtactttgtgt 232  Q
    ||||  ||||||||||||||    
T  5611597 atttttgttgtactttgtgt 5611578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 5891216 - 5891551
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||  ||| ||||| |||||| ||||||    
T  5891216 atcatcattggtcccctcttgttt-ggaagaaatggagagtaagttattggaaactcgtagacaagattctctgtttgattttccggaggatgcattttg 5891314  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||| || |||||||||| ||||||||| |||||||||||||||||| |||||||| ||  ||||||||||| |||| |    ||||||||||||| |    
T  5891315 aatatgtaattgatagaggaaagacatacaaaattttaaggtggtgatagcattagtgctaaggattgtgataaatattaaatcgatgttttctattttc 5891414  T
Q  213 atttaagttgtactt----------------tgtgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaa--agtgtcattgag 294  Q
    |||||||||||| ||                |||||||||||||||||||||||||||||  |||||||||| |||||||||||||  ||||||||||||    
T  5891415 atttaagttgtattttgtgtttactcctttgtgtgtgatgatatgtattataactttgaatgaacattctataaagtttaaataaaacagtgtcattgag 5891514  T
Q  295 aattatagtgatagtgtttcattcaaaatagaaatat 331  Q
    |||||| || |||||||||||||||| ||| ||||||    
T  5891515 aattatggtaatagtgtttcattcaagatacaaatat 5891551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 5897068 - 5897288
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||  ||| ||||| |||||| ||||||    
T  5897068 atcatcgttggtcccctcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttg 5897167  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |||| || ||| ||||||||||| |||| | |||||||||| |||||      
T  5897168 aatatgtaactgatagaggacagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttat 5897267  T
Q  213 atttaagttgtactttgtgtg 233  Q
    |||||||||||||||||||||    
T  5897268 atttaagttgtactttgtgtg 5897288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 5888205 - 5888425
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||  ||| ||||| |||||| ||||||    
T  5888205 atcatcgttggtcccctcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttg 5888304  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgttttctatttcc 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |||| || ||| ||||||||||| |||| | |||||||||| |||||      
T  5888305 aatatgtaactgatagaggacagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttat 5888404  T
Q  213 atttaagttgtactttgtgtg 233  Q
    ||| |||||||||||||||||    
T  5888405 attgaagttgtactttgtgtg 5888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 5557177 - 5556978
Alignment:
Q  32 tgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatgcaactgatagagg 131  Q
    ||||||||||| ||||||| ||||  |||| |||||| |  ||||||||||| ||  |||||||   |||||||||| |||||||||  |||||||||||    
T  5557177 tgttttggaagcaatggagggtaaattatttgaaacttgtggacaaaattctttgctggatcttttcaaggatgtatcttgaatatgttactgatagagg 5557078  T
Q  132 acagacatacagaattttaaggtggtgata---acattagtgatagagattgtgataattattgacataatgttttctatttccatttaagttgtacttt 228  Q
    ||| ||||||| | ||||||||| ||||||   ||||||||| ||  |||||||||||||||| | || |||||||| ||||||||||||||||||||||    
T  5557077 acaaacatacacagttttaaggttgtgatacttacattagtgctaaggattgtgataattattaaaatgatgttttcaatttccatttaagttgtacttt 5556978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 5603660 - 5603458
Alignment:
Q  32 tgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatgcaactgatagagg 131  Q
    ||||||||||| | ||||| ||||  ||||||||||| |  ||||||| ||| ||  |||| |||  |||||||||| | ||||||| ||| || |||||    
T  5603660 tgttttggaagcattggagggtaaagtattggaaacttgtggacaaaactctttgctggattttctcaaggatgtatatggaatatgtaaccgacagagg 5603561  T
Q  132 acagacatacagaattttaaggtggtgataacattagt--gatagagattgtgataattattgacataatgttttctatttccatttaagttgtactttg 229  Q
     || ||||||| | ||||||||||||||||||||||||  |  ||  ||||||||||||  | | | |||||||||| ||| |||||| ||||| |||||    
T  5603560 tcaaacatacatagttttaaggtggtgataacattagtgcgcaagtcattgtgataatttgtaaaacaatgttttctgtttacatttatgttgttctttg 5603461  T
Q  230 tgt 232  Q
    |||    
T  5603460 tgt 5603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 5562744 - 5562690
Alignment:
Q  228 tgtgtgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaa 282  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  5562744 tgtgtgatgatatgtactataactttgaagaaacattctataaagtttaaataaa 5562690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 5573147 - 5573271
Alignment:
Q  32 tgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatgcaactgatagagg 131  Q
    ||||||||||| |||||||  |||| ||||||||||| |  || |||||||| ||  |||||||   ||||||  || ||||||||| |||  |||||||    
T  5573147 tgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatgtaacccatagagg 5573246  T
Q  132 acagacatacagaattttaaggtgg 156  Q
    ||||||||||| | |||||||||||    
T  5573247 acagacatacatagttttaaggtgg 5573271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 5585354 - 5585478
Alignment:
Q  32 tgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatgcaactgatagagg 131  Q
    ||||||||||| |||||||  |||| ||||||||||| |  || |||||||| ||  |||||||   ||||||  || ||||||||| |||  |||||||    
T  5585354 tgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatgtaacccatagagg 5585453  T
Q  132 acagacatacagaattttaaggtgg 156  Q
    ||||||||||| | |||||||||||    
T  5585454 acagacatacatagttttaaggtgg 5585478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 5888435 - 5888491
Alignment:
Q  287 tcattgagaattatagtgatagtgtttcattcaaaatagaaatataaaagttgattt 343  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||| ||||| ||||    
T  5888435 tcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaattt 5888491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 5556927 - 5556876
Alignment:
Q  232 tgatgatatgtattataactttgaaaaaacattctatgaagtttaaataaaa 283  Q
    ||||||||||||||||| | ||||| |||||||| || ||||||||||||||    
T  5556927 tgatgatatgtattatagcattgaagaaacattcaataaagtttaaataaaa 5556876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 5897301 - 5897354
Alignment:
Q  290 ttgagaattatagtgatagtgtttcattcaaaatagaaatataaaagttgattt 343  Q
    ||||||||| | | ||||||||||||||||||| ||||||||| ||||| ||||    
T  5897301 ttgagaattgtggagatagtgtttcattcaaaacagaaatatataagttaattt 5897354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 5609529 - 5609473
Alignment:
Q  228 tgtgtgatgatatgtattataacttt-----gaaaaaacattctatgaagtttaaat 279  Q
    ||||||||||||||||||||||||||     |||  |||||||||||||||||||||    
T  5609529 tgtgtgatgatatgtattataactttaatttgaagcaacattctatgaagtttaaat 5609473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 5856317 - 5856221
Alignment:
Q  22 ggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttgaatatg 118  Q
    |||||| || ||||||||||| ||||||| ||| | ||||||||||||   ||||||||||| ||  |||| ||||   ||||| ||||||||||||    
T  5856317 ggtcccatcatgttttggaagcaatggagggtaggttattggaaactcatggacaaaattctttgctggatattcccttggatgcattttgaatatg 5856221  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 1481421 - 1481230
Alignment:
Q  13 atcatcatcggtcccctcttgttttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccgaaggatgtattttg 112  Q
    |||||||||| |||  || ||| ||||||| ||||||| ||||| |||||| || | |  ||||||||||| ||  |||||||   ||||||| || |||    
T  1481421 atcatcatcgttcctatcatgtcttggaagcaatggagggtaaggtattggcaagttgtggacaaaattctttgctggatcttttcaaggatgaatcttg 1481322  T
Q  113 aatatgcaactgatagaggacagacatacagaattttaaggtggtgataacattagtgatagagattgtgataattattgacataatgtttt 204  Q
    |||||||||||||||||||||| ||||||| | ||||||||||| |||| |||||||| |||  ||||| ||||||| | | ||||||||||    
T  1481321 aatatgcaactgatagaggacaaacatacacagttttaaggtggcgataccattagtgctagtcattgtaataattagtaagataatgtttt 1481230  T

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