View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_27 (Length: 314)
Name: NF5404_high_27
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 27183997 - 27184211
Alignment:
| Q |
3 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaaggtgcaagt |
102 |
Q |
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| T |
27183997 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcgattttaaaggtgcaagt |
27184096 |
T |
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| Q |
103 |
catgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaaaagcttaaagttttcaacctga |
202 |
Q |
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| T |
27184097 |
cgcgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaacagcttaaagttttcaacctga |
27184196 |
T |
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| Q |
203 |
aggtttatgagtcta |
217 |
Q |
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| T |
27184197 |
aggtttatgagtcta |
27184211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 27230254 - 27229995
Alignment:
| Q |
3 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaaggtgcaagt |
102 |
Q |
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| T |
27230254 |
gaagaaaggaaatatattcttaagtatagagaatggtaaaatagcttgctttgatttaacaaccaaggtgattgaggagatcggttttaaaagagaaatt |
27230155 |
T |
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| Q |
103 |
catgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaaaagcttaaagttttcaacctga |
202 |
Q |
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| T |
27230154 |
catatttgtcaaatagtacattacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtcaaagcttaaagttttcaaccagg |
27230055 |
T |
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| Q |
203 |
aggtttatgagtctagttactcagatttaatgatgtattaaataataggatgcagtactt |
262 |
Q |
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| T |
27230054 |
agatttatgagtctagttactaagatttaatgctttattaaacaataggatgcagtactt |
27229995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 27184357 - 27184439
Alignment:
| Q |
216 |
tagttactcagatttaatgatgtattaaataataggatgcagtactttctatgacataatagactgatttttgctttacttac |
298 |
Q |
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| T |
27184357 |
tagttactaagatttaatgctgtattaaataataggatgcagtactttctatgacatattagactgatttttgctttacttac |
27184439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 13472878 - 13472793
Alignment:
| Q |
13 |
aatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaacc--ga-ggtgattgaggagatcggttttaaagg |
95 |
Q |
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| T |
13472878 |
aatatattcttcaataaaaaagatggtaaaatagcttgttttgatttaactaccatgatgatgattgaggagatcgatgttaaagg |
13472793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 19163163 - 19163113
Alignment:
| Q |
44 |
tagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaag |
94 |
Q |
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| T |
19163163 |
tagcttgttttgatttaactaccgggatgattgaggagattggtgttaaag |
19163113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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