View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_29 (Length: 290)
Name: NF5404_high_29
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 50094596 - 50094866
Alignment:
| Q |
6 |
agaagcaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggt |
105 |
Q |
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| T |
50094596 |
agaagaaaagggatccaaatgctcccaagagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggt |
50094695 |
T |
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| Q |
106 |
ggtgtggaaatgatcacttttcttctgtaaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacggaatctaaagaaaa |
205 |
Q |
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| T |
50094696 |
ggcgtggaaatgatcacttttcttctataaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacagaatctaaagaaaa |
50094795 |
T |
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| Q |
206 |
ctaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
276 |
Q |
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| T |
50094796 |
ctaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
50094866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 7073822 - 7073921
Alignment:
| Q |
177 |
tttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
276 |
Q |
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| T |
7073822 |
ttttttttaatgacagaatctaaagaaaactaatcctggaatttcatttacggacgtgggaagagtacttggagaaaaatggaaaaatctgtcaggtatg |
7073921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 35497904 - 35497817
Alignment:
| Q |
6 |
agaagcaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgtt |
93 |
Q |
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| T |
35497904 |
agaagaaaaaggatccaaatgcacccaagaggggaatgtctggattcatgttcttttctcaaatggaaagagaggtgtgttttatgtt |
35497817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 35497709 - 35497611
Alignment:
| Q |
178 |
ttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
276 |
Q |
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| T |
35497709 |
tttttttaacgacagaatataaagaaagctaatcctgggatttcatttacggatgtggcaaagttacttggagaaaactggaaaaaaatgtcaggtatg |
35497611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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