View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_3 (Length: 640)

Name: NF5404_high_3
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_3
NF5404_high_3
[»] chr7 (4 HSPs)
chr7 (124-635)||(12825305-12825817)
chr7 (43-125)||(12825839-12825921)
chr7 (447-591)||(35400749-35400893)
chr7 (338-463)||(35024563-35024688)
[»] chr4 (3 HSPs)
chr4 (214-606)||(37035320-37035710)
chr4 (238-430)||(24189326-24189517)
chr4 (530-585)||(24189605-24189660)
[»] chr3 (2 HSPs)
chr3 (365-594)||(47820122-47820348)
chr3 (338-376)||(28571641-28571679)
[»] chr6 (2 HSPs)
chr6 (246-463)||(34774684-34774900)
chr6 (364-590)||(11779930-11780156)
[»] chr1 (2 HSPs)
chr1 (246-463)||(42748870-42749086)
chr1 (565-596)||(47318630-47318661)
[»] chr8 (1 HSPs)
chr8 (434-474)||(38553114-38553154)


Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 124 - 635
Target Start/End: Complemental strand, 12825817 - 12825305
Alignment:
Q  124 ccttcgaaggttgtagcgttttcttggaagttcctatatgatcaaatacctacaagggtgaatctttcgatgatgaatgtattaccaacagatgctcctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12825817 ccttcgaaggttgtagcgttttcttggaagctcctatatgatcgaatatctacaagggtgaatctttcgatgatgaatgtattaccaacggatgctcctc 12825718  T
Q  224 agtgttgtaccttttgtgagacggtggatgaatcatcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatgggggtgat 323  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825717 agtgttgtaccttttgtgagacggtggatgaatcgtcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatgggggtgat 12825618  T
Q  324 tggataagtttcatttaattccgcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttat 423  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825617 gggataagtttcatttaattccgcctaatttattcgttctttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttat 12825518  T
Q  424 ttggcattcgacgattttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaagggg 523  Q
    | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  12825517 tcggcattctacgagtttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtg 12825418  T
Q  524 ttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatccga-ggaatgccttacgtggctgctttaac 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  12825417 ttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatccgagggaatgccttacgcggctgctttaac 12825318  T
Q  623 tacctttgcttct 635  Q
    |||||||| ||||    
T  12825317 tacctttggttct 12825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 12825921 - 12825839
Alignment:
Q  43 cggtcaaatcaacatatgataagctagtggggttagtgttggaggaagatttgtggagtacggaggagaagagtgtttctgcc 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825921 cggtcaaatcaacatattataagctagtggggttagtgttggaggaagatttgtggagtacggaggagaagagtgtttctgcc 12825839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 447 - 591
Target Start/End: Original strand, 35400749 - 35400893
Alignment:
Q  447 tgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttgga 546  Q
    |||||||||| |||||||||||| |||||||||| || ||  ||   |||| |||||||||||||||||| ||||  ||| ||||| | ||| | |||||    
T  35400749 tgtggaaagcgaggaatgataaggtttttaataaccgaaatccgtatgtgggtgaaatggtggatgatgtcaaggttttgtcttggagatgggctttgga 35400848  T
Q  547 tagaatttctatgcctccttgtatgtattatgaatggtgttggaa 591  Q
    |||||| |||||||| || ||||||||||| ||||||||||||||    
T  35400849 tagaatctctatgccaccgtgtatgtattacgaatggtgttggaa 35400893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 35024688 - 35024563
Alignment:
Q  338 ttaattccgcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcattcgacga 437  Q
    |||||||| ||||| || ||| | | ||||||||||||||  || || |||||||||||| |||  ||||| |  ||||| ||||||||||||   ||||    
T  35024688 ttaattccccctaacttcttcatcctttgggagtgttggttcggaggggagaggaataagagaactcgtaacgaattaaggcttatttggcatattacga 35024589  T
Q  438 ttttggttttgtggaaagcaaggaat 463  Q
    ||| ||| || |||||||| ||||||    
T  35024588 tttgggtgttatggaaagctaggaat 35024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 214 - 606
Target Start/End: Original strand, 37035320 - 37035710
Alignment:
Q  214 gatgctcctcagtgttgtaccttttgtgagacggtggatgaatcatcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaa 313  Q
    ||||||||||  | ||||||||| |||||||  ||||||||||| |||| |||||| ||||| |||||||||||||||| |||||| ||||  | | | |    
T  37035320 gatgctcctcgtttttgtaccttgtgtgaga--gtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggcgtgatatta 37035417  T
Q  314 tgggggtgattggataagtttcatttaattccgcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtt 413  Q
    ||||| || | ||| | ||||  | ||||||||||||||||||| ||    |||||||||||| |||| || ||||||| |||||| || ||| | || |    
T  37035418 tgggg-tggtgggagaggtttattgtaattccgcctaatttatttgtcttatgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggt 37035516  T
Q  414 taagacttatttggcattcgacgattttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatga 513  Q
    ||||| | |||||||||   ||||||| |||||| |||||||| || ||||| ||||||||||||||||||||  ||| |||||  || || ||||| ||    
T  37035517 taagattaatttggcatgttacgatttgggttttatggaaagctagaaatgacaagatttttaataatcggaatccggaggtggtggatattgtggagga 37035616  T
Q  514 tgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatccga-ggaatgcctt 606  Q
    | | ||||  ||||||||||||||||||||||| | |||| | ||||||||||||||||  ||||| ||||||||| |||||| ||||||||||    
T  37035617 tattaaggtattgacttggcggtggtcgttggagataattgcaatgcctccttgtatgttctatgagtggtgttgggatccgagggaatgcctt 37035710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 430
Target Start/End: Original strand, 24189326 - 24189517
Alignment:
Q  238 tgtgagacggtggatgaatcatcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatgggggtgattggataagtttcat 337  Q
    ||||||| |||||||||||| |||||||| || |||||||||||||| || || | |||||| ||||||||| | ||| ||  |   ||| | | |||      
T  24189326 tgtgagagggtggatgaatcgtcaattcacctctttcttcattgtgatgtagcgggaagggtgtggcaaggtattatgcggtaggg-ggagaggattctc 24189424  T
Q  338 ttaattccgcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcat 430  Q
    ||||||| |||||| || |||| || ||||||||||||| ||||||| |||  ||||||| |||| ||||| ||  |||||||||||||||||    
T  24189425 ttaattctgcctaacttgttcgctctttgggagtgttggagtggtggcgagcagaataagagaattcgtaagggcctaagacttatttggcat 24189517  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 585
Target Start/End: Original strand, 24189605 - 24189660
Alignment:
Q  530 tggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtg 585  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||    
T  24189605 tggcgatggtctttggatagaatctctatgcctccgtgtatgtactatgaatggtg 24189660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 365 - 594
Target Start/End: Original strand, 47820122 - 47820348
Alignment:
Q  365 tgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatg 464  Q
    |||||||||||||| ||||| |||||||| ||| | || |||   || |||||| | ||||||||| ||||||||| |||||| |||||||| |||||||    
T  47820122 tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatg 47820221  T
Q  465 ataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctcc 564  Q
    | ||||| || ||||||||||| | || |||||||   || ||||| ||| | |||| | | |||||| ||||||||||||| | |||  | ||| ||||    
T  47820222 acaagatcttcaataatcggaatttggtggtggat---attgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctcc 47820318  T
Q  565 ttgtatgtattatgaatggtgttggaatcc 594  Q
     |||||||  ||||| ||||||||||||||    
T  47820319 gtgtatgttctatgagtggtgttggaatcc 47820348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 28571641 - 28571679
Alignment:
Q  338 ttaattccgcctaatttattcgttcattgggagtgttgg 376  Q
    |||||||||||||||||||| || |||||||||||||||    
T  28571641 ttaattccgcctaatttatttgtgcattgggagtgttgg 28571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 463
Target Start/End: Complemental strand, 34774900 - 34774684
Alignment:
Q  246 ggtggatgaatcatcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatgggggtgattggataagtttcatttaattcc 345  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |  || || ||||| ||||| |||||| || | ||| | | |    ||||||||    
T  34774900 ggtggacgaatcatcaattcatctatttctccattgtgaggttgctggtagagtatggcagggtgttatgggg-tggtgggagaggatgatgttaattcc 34774802  T
Q  346 gcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggtt 445  Q
     ||||| || ||| | | ||||||||||||||| || || |||||||||||| |||  ||||| || ||||| |||||||||||| | ||||||| |||     
T  34774801 ccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtg 34774702  T
Q  446 ttgtggaaagcaaggaat 463  Q
    || |||||||| ||||||    
T  34774701 ttatggaaagctaggaat 34774684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 590
Target Start/End: Original strand, 11779930 - 11780156
Alignment:
Q  364 ttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaat 463  Q
    ||||||||||||| |||||| ||||||| ||||| ||||| |||| ||  |  |||||||||||||  | ||| | | ||  |||||||| |||||||||    
T  11779930 ttgggagtgttggagtggtgtagagagggataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtggaaggcaaggaat 11780029  T
Q  464 gataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctc 563  Q
    ||||   ||||||||   |||||  |||  ||||| ||||| ||||| ||  | ||||  | | | ||||| ||||| ||||| |||||||||||||| |    
T  11780030 gatagagtttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccc 11780129  T
Q  564 cttgtatgtattatgaatggtgttgga 590  Q
    | |||||||| |||||||||| |||||    
T  11780130 cgtgtatgtactatgaatggttttgga 11780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 463
Target Start/End: Complemental strand, 42749086 - 42748870
Alignment:
Q  246 ggtggatgaatcatcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatgggggtgattggataagtttcatttaattcc 345  Q
    |||||| | ||| ||||||||||| ||||||||||||||||||||||  || || ||||| ||||| |||||| || | ||| | | |    ||||||||    
T  42749086 ggtggacggatcctcaattcatctttttcttcattgtgaggttgccggtagagtgtggcagggtgttatgggg-tggtgggagaggatgatgttaattcc 42748988  T
Q  346 gcctaatttattcgttcattgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggtt 445  Q
     ||||| || ||| ||| ||||||||||||| | || || |||||||||||| |||  ||||  || ||||| |||||||||||| | ||||||| |||     
T  42748987 ccctaacttcttcattctttgggagtgttggagcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtg 42748888  T
Q  446 ttgtggaaagcaaggaat 463  Q
    || |||||||| ||||||    
T  42748887 ttatggaaagctaggaat 42748870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 596
Target Start/End: Complemental strand, 47318661 - 47318630
Alignment:
Q  565 ttgtatgtattatgaatggtgttggaatccga 596  Q
    ||||||||||||||||||||||||||||||||    
T  47318661 ttgtatgtattatgaatggtgttggaatccga 47318630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 474
Target Start/End: Original strand, 38553114 - 38553154
Alignment:
Q  434 acgattttggttttgtggaaagcaaggaatgataagatttt 474  Q
    ||||||| ||| ||||||||||| |||||||||||||||||    
T  38553114 acgatttgggtgttgtggaaagctaggaatgataagatttt 38553154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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