View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_34 (Length: 267)

Name: NF5404_high_34
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_34
NF5404_high_34
[»] chr7 (12 HSPs)
chr7 (18-249)||(22913634-22913865)
chr7 (21-223)||(22898255-22898457)
chr7 (21-185)||(22875946-22876110)
chr7 (21-214)||(22831032-22831225)
chr7 (21-185)||(22815057-22815221)
chr7 (21-185)||(22840082-22840246)
chr7 (21-185)||(22889322-22889486)
chr7 (23-215)||(22809644-22809836)
chr7 (86-214)||(22893945-22894073)
chr7 (21-80)||(22805444-22805503)
chr7 (128-214)||(22885595-22885681)
chr7 (22-100)||(22842267-22842345)
[»] chr1 (1 HSPs)
chr1 (21-214)||(21150520-21150713)
[»] chr2 (1 HSPs)
chr2 (47-165)||(3741442-3741560)
[»] chr5 (1 HSPs)
chr5 (134-183)||(15628278-15628327)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 22913865 - 22913634
Alignment:
Q  18 ggttaccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913865 ggttaccaaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactat 22913766  T
Q  118 tatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22913765 tatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcggcaggatattatgatatt 22913666  T
Q  218 gatggtaatgagttcaagaatttgagcctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  22913665 gatggtaatgagttcaagaatttgagcctttt 22913634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 22898457 - 22898255
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    ||||||||||||||| |||||||||||||||||| || ||  | || ||||||||||| |  |  ||||||||||||||| | || ||||||||||||||    
T  22898457 taccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttgatactattat 22898358  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgat 220  Q
     | ||  |||||  ||||||||||||| ||||||||||| ||||||||||||| |||||||||||  |||||  || | ||||||||||||||| || ||    
T  22898357 tagtagtgagtttaatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcagctaaatcaactcctgcaggatattatgatgttaat 22898258  T
Q  221 ggt 223  Q
    |||    
T  22898257 ggt 22898255  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 22876110 - 22875946
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    ||||||| ||||||||| |||||||||||||||| || ||  | ||||||||||||||||  |  ||||||||||||||| | || |||||| || || |    
T  22876110 taccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgtttt 22876011  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 185  Q
    || ||  |||||  |||||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  22876010 gactaatgagtttaatgatatcgatgataaccatgttggaattgatatcaatgatttgaaatcag 22875946  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 22831225 - 22831032
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    |||||||||||||||||| ||||||| ||||||| || ||  |||| |||| ||||||||  |  ||||||||||||||| | |||||||| |||  ||     
T  22831225 taccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtaa 22831126  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgat 214  Q
     |||   ||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||  || ||  || | |||||||||||||||    
T  22831125 aaattttgagtttgatgatatcaatgataatcatgttggaattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgat 22831032  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 22815221 - 22815057
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    |||||||||||||||||||||||||||||||||| || || || || |||||||||||||  || ||||||||||||||| | |||||||| |||  |      
T  22815221 taccaaattcactaccaagtcaataccttggtctctttaacgattccaacaatggaaacagtaacaaccatgtttttggtgttgagcttgacactcgtca 22815122  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 185  Q
      ||  | |||| |||||||||||||| ||||||||||| || |||||||||  |||||||||||    
T  22815121 agatttgcagtttgatgatatcaatgataaccatgttggtatcgatatcaattatttgaaatcag 22815057  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 22840246 - 22840082
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    |||||||||||||||||||||||||||||||||| || ||  | || |||| |||||||      ||||||||||||||| | || ||||||||| || |    
T  22840246 taccaaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaaacggtggcaaccatgtttttggtgttgaacttgatactcttct 22840147  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 185  Q
     | ||  ||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  22840146 aagtagtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcag 22840082  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 22889486 - 22889322
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    ||||| |||||||||||||||||||||||||||| || || || || |||| ||||||||  |  ||||||||||||||| | |||||||| |||  |      
T  22889486 taccagattcactaccaagtcaataccttggtctctttaacgattccaacagtggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtca 22889387  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 185  Q
     |||   ||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  22889386 aaattttgagtttgatgatatcaacgataaccatgttggaattgatatcaatgatttgaaatcag 22889322  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 22809836 - 22809644
Alignment:
Q  23 ccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatga 122  Q
    |||||||||  | |||||||||| |||||||| || ||  | || |||||||||||||  | |||||||||||| ||| | || || |||||| || | |    
T  22809836 ccaaattcaaaagcaagtcaatatcttggtctctttaaccaatccaacaatggaaacagtagtaaccatgttttcggtgttgaactagatactcttctaa 22809737  T
Q  123 atacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgata 215  Q
     ||  ||||| |||||||||||||| |||||| |||| ||||||||||||| |||||||||||  || ||  || | ||||||||||||||||    
T  22809736 gtagtgagtttgatgatatcaatgataaccatattggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgata 22809644  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 22894073 - 22893945
Alignment:
Q  86 aaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 185  Q
    ||||| ||||||||| | || ||||||||||||   |||   ||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  22894073 aaccacgtttttggtgttgaacttgatactattgaaaatcgtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcag 22893974  T
Q  186 agaaatcggcttcagcaggatattatgat 214  Q
      || ||  || | |||||||||||||||    
T  22893973 ctaattcaactcctgcaggatattatgat 22893945  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 22805503 - 22805444
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaaca 80  Q
    |||||||||||||||||| ||||||||||||||| || ||||| || |||||||||||||    
T  22805503 taccaaattcactaccaaatcaataccttggtctctttaatgattccaacaatggaaaca 22805444  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 22885681 - 22885595
Alignment:
Q  128 gagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgat 214  Q
    ||||| ||||| |||||||| |||||| |||| ||||||||||||| |||||||||||  || ||  || | |||||||||||||||    
T  22885681 gagtttgatgaaatcaatgataaccatattggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgat 22885595  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 22842345 - 22842267
Alignment:
Q  22 accaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggt 100  Q
    |||||||||||||||| |||||||||||||||| || ||  | || ||||||||||| |  |  |||||||||||||||    
T  22842345 accaaattcactaccaggtcaataccttggtctctttaacaattccaacaatggaaatagtagcaaccatgtttttggt 22842267  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 21150520 - 21150713
Alignment:
Q  21 taccaaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 120  Q
    ||||||||||||||||||  |||||||||||||| || ||  | || |||||||||||||  |  ||||||||||||||| | |||||||| ||| ||      
T  21150520 taccaaattcactaccaacacaataccttggtctctttaacaattccaacaatggaaacagtagcaaccatgtttttggtgttgagcttgacactgttca 21150619  T
Q  121 gaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgat 214  Q
      ||   ||||| |||||||||||| | ||||||||||| ||||||||||||| |||||||||||  || ||  |||| ||||| |||||||||    
T  21150620 agattttgagtttgatgatatcaataataaccatgttggtattgatatcaatgatttgaaatcagctaactcaacttctgcaggctattatgat 21150713  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 3741442 - 3741560
Alignment:
Q  47 cttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatg 146  Q
    |||||||| || |||  |||||||||||||||   ||| ||||||||||||||| | ||| |||||  | ||||||||   |||||  ||||||||||||    
T  3741442 cttggtctttttaatctctcaaacaatggaaattccaacaaccatgtttttggtgttgagtttgatgtttttatgaatcaagagtttaatgatatcaatg 3741541  T
Q  147 acaaccatgttggaattga 165  Q
      |||||||||||||||||    
T  3741542 ctaaccatgttggaattga 3741560  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 15628327 - 15628278
Alignment:
Q  134 gatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatc 183  Q
    |||||||| ||||| ||||||||||| || || |||||||||||||||||    
T  15628327 gatgatattaatgataaccatgttggtatagacatcaatggtttgaaatc 15628278  T

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