View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_35 (Length: 265)

Name: NF5404_high_35
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_35
NF5404_high_35
[»] chr5 (4 HSPs)
chr5 (29-226)||(16072179-16072376)
chr5 (82-227)||(20695852-20695997)
chr5 (67-166)||(20100979-20101078)
chr5 (65-125)||(22642796-22642856)
[»] chr1 (4 HSPs)
chr1 (76-226)||(19256823-19256975)
chr1 (86-136)||(23420510-23420560)
chr1 (100-176)||(26654168-26654244)
chr1 (62-170)||(33175495-33175602)
[»] scaffold0008 (1 HSPs)
scaffold0008 (70-210)||(10804-10945)
[»] chr4 (5 HSPs)
chr4 (85-226)||(23354653-23354794)
chr4 (62-157)||(18778289-18778384)
chr4 (94-199)||(7144319-7144423)
chr4 (67-140)||(8926417-8926490)
chr4 (118-228)||(42498663-42498773)
[»] chr2 (5 HSPs)
chr2 (62-156)||(31275254-31275348)
chr2 (67-139)||(25461225-25461297)
chr2 (85-207)||(19541698-19541821)
chr2 (65-166)||(21243219-21243320)
chr2 (86-142)||(23854079-23854135)
[»] chr3 (2 HSPs)
chr3 (94-217)||(11475968-11476090)
chr3 (130-176)||(22487809-22487857)
[»] chr8 (6 HSPs)
chr8 (64-201)||(27084122-27084259)
chr8 (76-156)||(6887075-6887155)
chr8 (86-171)||(35134470-35134554)
chr8 (137-226)||(13581899-13581989)
chr8 (67-174)||(18789999-18790106)
chr8 (65-145)||(36317251-36317331)
[»] scaffold0190 (1 HSPs)
scaffold0190 (130-217)||(6947-7033)
[»] chr6 (5 HSPs)
chr6 (160-208)||(1130544-1130592)
chr6 (77-176)||(17196123-17196222)
chr6 (86-123)||(11076961-11076998)
chr6 (62-123)||(17320772-17320832)
chr6 (67-171)||(22557856-22557959)
[»] chr7 (4 HSPs)
chr7 (67-193)||(20347493-20347615)
chr7 (66-103)||(2090957-2090994)
chr7 (87-156)||(11466937-11467006)
chr7 (67-174)||(10925012-10925119)
[»] scaffold0107 (1 HSPs)
scaffold0107 (190-226)||(32746-32782)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 16072376 - 16072179
Alignment:
Q  29 aggctaaaagtgggtccttgtgattgtacatggttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |     
T  16072376 aggctaaaagtgggtccttgtgattgtacatggttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagtaattgtctccacaaggattgtca 16072277  T
Q  129 gtcaacttggtaattagaagaatttatttggaagtaaataaaagaagaaatttaaaaatggttgcagggttttgattgtcctacccaatacgagatta 226  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16072276 gtcaacttggtaattaaaagaatttatttggaagtaaataaaagaagaaatttaaaaatggttgcagggttttgattgttctacccaatacgagatta 16072179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 20695997 - 20695852
Alignment:
Q  82 tactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaagaagaaattt 181  Q
    ||||| ||||| ||||||||||||||| ||||||| | |||||| || |||||| |||||||| | ||||||||||| ||||||||||||||||| ||||    
T  20695997 tactccagtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaatttatttgaaagtaaataaaagaagagattt 20695898  T
Q  182 aaaaatggttgcagggttttgattgtcctacccaatacgagattaa 227  Q
    |||| ||||||||  ||||| ||||||||||||||| ||| |||||    
T  20695897 aaaagtggttgcaaagttttaattgtcctacccaatgcgatattaa 20695852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 20101078 - 20100979
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaa 166  Q
    |||||||  ||||| ||||||||||| ||||||||||||||| ||||||| |||||||| || ||||||||||| ||||| ||||||||||  |||||||    
T  20101078 aagtgcatcaaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttagatgaatttatttaaaagtaaa 20100979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 22642796 - 22642856
Alignment:
Q  65 gtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattg 125  Q
    |||||||||| ||||| ||||||||||| || |||||||||||  ||||||||| ||||||    
T  22642796 gtaagtgcaccaaatcatactcaagtaataatgtagtaagttaacgtctccaaatggattg 22642856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 19256823 - 19256975
Alignment:
Q  76 aaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattaga-agaatttatttggaagtaaataaaagaa 174  Q
    |||||||||| |||||| ||||||||||||||| || |||| | | |||| || |||||| || |||||||  ||||||||||| |||||||||||| ||    
T  19256823 aaatcgtacttaagtaataaagtagtaagttatcgtatccacatgaattgtcgttcaactcggcaattagattgaatttatttgaaagtaaataaaaaaa 19256922  T
Q  175 gaa-atttaaaaatggttgcagggttttgattgtcctacccaatacgagatta 226  Q
    ||| ||||| || |||||| |||||||| ||||| || | |||||||||||||    
T  19256923 gaatatttagaagtggttgtagggttttaattgttctgctcaatacgagatta 19256975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 23420510 - 23420560
Alignment:
Q  86 caagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaactt 136  Q
    ||||||| ||||||||||||||| ||||||| |||||||| || |||||||    
T  23420510 caagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaactt 23420560  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 26654168 - 26654244
Alignment:
Q  100 gtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaagaaga 176  Q
    ||||||||||||||| | | |||||| |  || ||| | ||||||||  |||||||||| |||||||||||||||||    
T  26654168 gtaagttattgtctcaacatggattgtcattctactcgataattagagaaatttatttgaaagtaaataaaagaaga 26654244  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 33175495 - 33175602
Alignment:
Q  62 ttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaa 161  Q
    |||| |||||||| ||||| ||  ||||||| ||| |||||||||||  |||||| |  ||||| || ||||||| | ||||||| ||||||| || |||    
T  33175495 ttggcaagtgcaccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaattta-ttagaa 33175593  T
Q  162 gtaaataaa 170  Q
    |||||||||    
T  33175594 gtaaataaa 33175602  T

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Target: scaffold0008 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 10804 - 10945
Alignment:
Q  70 tgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaa-gaatttatttggaagtaaata 168  Q
    ||||| |||||||| |||||||| ||||||||||||||| || |||||| || ||| || ||||||   ||| ||||  ||||||||||| || ||||||    
T  10804 tgcaccaaatcgtagtcaagtaataaagtagtaagttatcgtttccaaagggtttgtcgatcaactcaataaatagattgaatttatttgaaactaaata 10903  T
Q  169 aaagaagaaatttaaaaatggttgcagggttttgattgtcct 210  Q
    |||||||| ||||| || |||||||| |||||| ||||||||    
T  10904 aaagaagagatttagaagtggttgcatggttttaattgtcct 10945  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 23354794 - 23354653
Alignment:
Q  85 tcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaa-gaatttatttggaagtaaataaaagaagaaatttaa 183  Q
    |||||||| ||||||||||||||| || |||| |  ||||  || |||||| |||||||||   ||||||||||| ||||||||||||||||| |||| |    
T  23354794 tcaagtaataaagtagtaagttat-gtttccacagagattatcgttcaactcggtaattagtttgaatttatttgaaagtaaataaaagaagagatttga 23354696  T
Q  184 aaatggttgcagggttttgattgtcctacccaatacgagatta 226  Q
    || |||||| |||||||| ||||||||  |||||||| |||||    
T  23354695 aagtggttgtagggttttaattgtcctgtccaatacgtgatta 23354653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 18778384 - 18778289
Alignment:
Q  62 ttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttattt 157  Q
    |||| |||| ||| |||| |||||||||||| ||||||||||||||| || ||||   |||||| || ||||||| ||||||||| ||||||||||    
T  18778384 ttggcaagtacaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattagatgaatttattt 18778289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 7144423 - 7144319
Alignment:
Q  94 aaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaagaagaaatttaaaaatggttgc 193  Q
    |||||||||||||||  ||| || | |||||| || |||||| ||||||||  ||| |||||||| ||||||||||||||| | |||  |||| ||||||    
T  7144423 aaagtagtaagttatcttcttcacatggattgtcgttcaactcggtaattatcagattttatttgaaagtaaataaaagaa-atattataaaagggttgc 7144325  T
Q  194 agggtt 199  Q
    ||||||    
T  7144324 agggtt 7144319  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 8926490 - 8926417
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggta 140  Q
    |||||||  ||||| ||||||||||| ||||||| ||||||| ||||||| | |||||| || |||||||||||    
T  8926490 aagtgcatcaaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaacttggta 8926417  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 42498773 - 42498663
Alignment:
Q  118 aaggattgccggtcaacttggtaattagaagaatttatttgga--agtaaataaaagaagaaatttaaaaatggttgcagggttttgattgtcctaccca 215  Q
    |||||||| || ||||||||||||||||  |||||||||| ||  ||||||||| |||| | ||||  || ||||||||  ||||| |||||||| ||||    
T  42498773 aaggattgtcgttcaacttggtaattagcggaatttatttagaagagtaaataagagaaaagattt-gaagtggttgca-tgttttaattgtcctgccca 42498676  T
Q  216 atacgagattaat 228  Q
    || ||||||||||    
T  42498675 atgcgagattaat 42498663  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 31275348 - 31275254
Alignment:
Q  62 ttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatt 156  Q
    |||| |||||||| ||||||||  ||||||| ||||||||||||||| ||||||| ||||||||  | || ||||||||| |||||||| |||||    
T  31275348 ttggcaagtgcaccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttatt 31275254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 25461297 - 25461225
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggt 139  Q
    |||||||  |||| |||| ||||||| ||||||||||||||| ||||||||| |||||| || ||||||||||    
T  25461297 aagtgcatcaaattgtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 19541821 - 19541698
Alignment:
Q  85 tcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaa-gaatttatttggaagtaaataaaagaagaaatttaa 183  Q
    |||| ||| |||||||||| |||| ||||||| | |||||  || |||||  |||||||||   ||||||||||| ||||||||||||||||| |||| |    
T  19541821 tcaaataataaagtagtaaattatcgtctccacatggattttcgttcaacaaggtaattagtttgaatttatttgaaagtaaataaaagaagagatttga 19541722  T
Q  184 aaatggttgcagggttttgattgt 207  Q
    || |||||||| | |||| |||||    
T  19541721 aagtggttgcatgattttaattgt 19541698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 21243320 - 21243219
Alignment:
Q  65 gtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagta 164  Q
    |||||||||| |||| ||||| |||||| ||||||||||||||| | ||||| ||  |||| || ||||||  ||||||||| | ||||||||  |||||    
T  21243320 gtaagtgcaccaaattgtactaaagtaataaagtagtaagttatcgactccataaacattgtcgttcaactcagtaattagatgtatttatttaaaagta 21243221  T
Q  165 aa 166  Q
    ||    
T  21243220 aa 21243219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 23854079 - 23854135
Alignment:
Q  86 caagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaat 142  Q
    ||||||| |||||||||| |||||||||||| | |||||| || |||||| ||||||    
T  23854079 caagtaataaagtagtaaattattgtctccacagggattgtcgttcaactcggtaat 23854135  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 11476090 - 11475968
Alignment:
Q  94 aaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaagaagaaatttaaaaatggttgc 193  Q
    ||||||||| ||||||||||  | |||||||| || |||||| |||||||||| ||||||||| | |||||||||||| || ||  |||||| ||||||     
T  11476090 aaagtagtaggttattgtctttataaggattgtcgttcaactcggtaattagaggaatttattagaaagtaaataaaacaa-aagattaaaagtggttgt 11475992  T
Q  194 agggttttgattgtcctacccaat 217  Q
    | |||||| || ||||| ||||||    
T  11475991 aaggttttaatagtcctgcccaat 11475968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 22487809 - 22487857
Alignment:
Q  130 tcaacttggtaattagaagaatttattt--ggaagtaaataaaagaaga 176  Q
    ||||||||||||||||||||| ||||||  | |||||||||||||||||    
T  22487809 tcaacttggtaattagaagaacttatttaggaaagtaaataaaagaaga 22487857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 27084122 - 27084259
Alignment:
Q  64 ggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaa-gaatttatttggaag 162  Q
    ||||||||||  |||| ||||| || ||| ||||||||||||||| ||||| | | | |||| || | |||||| ||||||||  | ||||||||| |||    
T  27084122 ggtaagtgcatcaaattgtacttaactaataaagtagtaagttatcgtctcaataggaattgtcgtttaacttgataattagattgtatttatttgaaag 27084221  T
Q  163 taaataaaagaagaaatttaaaaatggttgcagggtttt 201  Q
    | |||||||||||| |||||||| | |||||||||||||    
T  27084222 tgaataaaagaagagatttaaaagt-gttgcagggtttt 27084259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 6887075 - 6887155
Alignment:
Q  76 aaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatt 156  Q
    ||||| ||| ||||||  ||| ||||||||||| ||||||| |||||||| || ||||||||||||||||  |||||||||    
T  6887075 aaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttatt 6887155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 35134470 - 35134554
Alignment:
Q  86 caagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaa 171  Q
    ||||||| ||| |||| ||||| |||||||| |||||||| || | |||||||||||||| | |||||| || |||||||||||||    
T  35134470 caagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaattta-ttagaagtaaataaaa 35134554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 13581899 - 13581989
Alignment:
Q  137 ggtaattagaagaatttatttggaa-gtaaataaaagaagaaatttaaaaatggttgcagggttttgattgtcctacccaatacgagatta 226  Q
    |||||||||| ||||||||||  || | ||||||||||| | | || ||| |||||||| |||||  ||||||||||||||| ||||||||    
T  13581899 ggtaattagaggaatttatttaaaacgaaaataaaagaaaagaattgaaagtggttgcaaggtttcaattgtcctacccaatgcgagatta 13581989  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 18790106 - 18789999
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttg-gaagtaa 165  Q
    |||||||| |||||||| |||||||| ||||||||||||||| |||| || | |||||  || |||||| | |||| || |||| |||||||  ||| ||    
T  18790106 aagtgcaccaaatcgta-tcaagtaataaagtagtaagttatcgtcttcatagggattttcgttcaactcgataatgagcagaacttatttgaaaagcaa 18790008  T
Q  166 ataaaagaa 174  Q
    |||||||||    
T  18790007 ataaaagaa 18789999  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 36317251 - 36317331
Alignment:
Q  65 gtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattag 145  Q
    |||||||||  |||||||||||||| || ||||||| ||||||| ||||| ||| || ||| || | |||||| |||||||    
T  36317251 gtaagtgcatcaaatcgtactcaagcaataaagtagcaagttatcgtctcaaaaggggttgtcgtttaacttgataattag 36317331  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 6947 - 7033
Alignment:
Q  130 tcaacttggtaattagaagaatttatttggaagtaaataaaagaagaaatttaaaaatggttgcagggttttgattgtcctacccaat 217  Q
    |||||| |||||||||| ||||||||||| |||| |||||||||||| | |||||| ||||| || | |||| |||||||||| ||||    
T  6947 tcaactcggtaattagatgaatttatttgaaagtgaataaaagaagaga-ttaaaagtggttacatgattttaattgtcctactcaat 7033  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 1130592 - 1130544
Alignment:
Q  160 aagtaaataaaagaagaaatttaaaaatggttgcagggttttgattgtc 208  Q
    ||||||||| ||||||| ||||||| |||||||||||||||| ||||||    
T  1130592 aagtaaatacaagaagatatttaaacatggttgcagggttttaattgtc 1130544  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 17196123 - 17196222
Alignment:
Q  77 aatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaataaaagaaga 176  Q
    |||||||||||||||| |||||||||||||||  | |||| | ||||||  | | ||||  ||||||||| || || ||||| ||| |||||||||||||    
T  17196123 aatcgtactcaagtaataaagtagtaagttatcctatccacagggattgttgtttaactcagtaattagaggatttaatttgaaagaaaataaaagaaga 17196222  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 11076998 - 11076961
Alignment:
Q  86 caagtaagaaagtagtaagttattgtctccaaaaggat 123  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  11076998 caagtaaaaaagtagtaagttattgtctccataaggat 11076961  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 17320832 - 17320772
Alignment:
Q  62 ttggtaagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggat 123  Q
    |||| |||||||| |||||||| | |||||| |||||||| |||||||||||||| ||||||    
T  17320832 ttggcaagtgcaccaaatcgtaat-aagtaataaagtagttagttattgtctccacaaggat 17320772  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 22557856 - 22557959
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttggaagtaaa 166  Q
    |||||||| ||||||||   |||||| ||||||||||||||| |||| || || ||||   | ||||||| || |||||| |||||||||| ||||||||    
T  22557856 aagtgcaccaaatcgtaaaaaagtaataaagtagtaagttatagtcttcacaaagatttttgttcaacttagtgattagaggaatttattt-gaagtaaa 22557954  T
Q  167 taaaa 171  Q
     ||||    
T  22557955 aaaaa 22557959  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 20347615 - 20347493
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaa-gaatttatttggaagtaa 165  Q
    |||| ||| ||||||||||||||||| |||||||||||||||  || ||| ||  |||     | |||| |||||||| |  ||||||||||| |||| |    
T  20347615 aagtacactaaatcgtactcaagtaataaagtagtaagttatcatccccacaaatatt-----ttaactcggtaattaaattgaatttatttgaaagtga 20347521  T
Q  166 ataaaagaagaaatttaaaaatggttgc 193  Q
    ||||||||||| |||||||| |||||||    
T  20347520 ataaaagaagagatttaaaagtggttgc 20347493  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 2090957 - 2090994
Alignment:
Q  66 taagtgcacgaaatcgtactcaagtaagaaagtagtaa 103  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  2090957 taagtgcaccaaatcgtactcaagtaataaagtagtaa 2090994  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 11466937 - 11467006
Alignment:
Q  87 aagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatt 156  Q
    |||||| ||||||||| ||||||||||||| | |||||| |  ||||||| | |||||| ||||||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttatt 11467006  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 10925119 - 10925012
Alignment:
Q  67 aagtgcacgaaatcgtactcaagtaagaaagtagtaagttattgtctccaaaaggattgccggtcaacttggtaattagaagaatttatttg-gaagtaa 165  Q
    |||||||| |||||||| |||||||| ||||||||||||||| |||| || | |||||  || |||||| | |||| || |||| |||||||  ||| ||    
T  10925119 aagtgcaccaaatcgta-tcaagtaataaagtagtaagttatcgtcttcatagggattttcgttcaactcgataatgagcagaacttatttgaaaagcaa 10925021  T
Q  166 ataaaagaa 174  Q
    |||||||||    
T  10925020 ataaaagaa 10925012  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 32782 - 32746
Alignment:
Q  190 ttgcagggttttgattgtcctacccaatacgagatta 226  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  32782 ttgcagggttttaattgtcctacccaatgcgagatta 32746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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