View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_36 (Length: 265)
Name: NF5404_high_36
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_36 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 19398175 - 19398429
Alignment:
| Q |
11 |
tgagatgaagagactataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaaatgtagaaacaaattgatcatttac |
110 |
Q |
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| T |
19398175 |
tgagatgaagagactataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaaatgtagaaacaaattgatcatttac |
19398274 |
T |
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| Q |
111 |
gtcaaagtaccatttgtttgcaatacataactacaaatatcatgtcattaaattagaggttgcttatagtctagtacaatcatatcaatttaaaatttat |
210 |
Q |
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| T |
19398275 |
gtcaaagtaccatttgtttgcaatacataactacaaatatcatgtcattaaattagaggttgcttatagtctagtacaatcatatcaatttaaaatttat |
19398374 |
T |
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| Q |
211 |
atttatatcattgtattagccaaatttaaagtccgggtaacttgtgtccattttt |
265 |
Q |
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| T |
19398375 |
atttatatcattgtattagccaaatttaaagtccgggtaacttgtgtccattttt |
19398429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 19373950 - 19374106
Alignment:
| Q |
11 |
tgagatgaagagactataggcattacataaatagcaatgttagaaa-caaaatgatagatattagatagcattgaaatgtagaaacaaattgatcattta |
109 |
Q |
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| T |
19373950 |
tgagatgtagaaactataggcattacataaatagcaatgttagaaaacaaattgatagatattagatagcattgaaatgtagaaacaaattgatcattta |
19374049 |
T |
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| Q |
110 |
c----gtcaaagtaccatttgtttgcaatacataactacaaatatcatgtcattaaa |
162 |
Q |
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| T |
19374050 |
cggcagtcaatgtaccatttgtttgcaatacagaactacaaatatcatgtctttaaa |
19374106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 19332371 - 19332521
Alignment:
| Q |
8 |
caatgagatgaagagactataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaaatgtagaaacaaattgatcatt |
107 |
Q |
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| T |
19332371 |
caatgagatgtagaaactattggcattacataaatagcaatgttagaaacaaattgatagatattagatagcattgaaatgtagaaataaattgatcatt |
19332470 |
T |
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| Q |
108 |
tac----gtcaaagtaccatttgtttgcaatacataactacaaatatcatg |
154 |
Q |
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| T |
19332471 |
tacggcagtcaatgtaccatttgttggcaatacaaaactgcaaatatcatg |
19332521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 19374185 - 19374235
Alignment:
| Q |
162 |
attagaggttgcttatagtctagtacaatcatatcaatttaaaatttatat |
212 |
Q |
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| T |
19374185 |
attagaggttgcttatagtctagaacaatcatattcacttaaaatttatat |
19374235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 19373925 - 19373963
Alignment:
| Q |
57 |
caaaatgatagatattagatagcattgaaatgtagaaac |
95 |
Q |
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| T |
19373925 |
caaattgatagatattagatagcattgagatgtagaaac |
19373963 |
T |
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