View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_37 (Length: 264)
Name: NF5404_high_37
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 27293182 - 27293427
Alignment:
| Q |
16 |
cagagggatcatctctagcatcattgaaagcacgaataagctccttaaccgtatgaggtcgaaaagcattcctcctctccggcctattaatgctaatctg |
115 |
Q |
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| T |
27293182 |
cagagggatcatctctagcatcattgaaagcacgaataagctccttaaccgtatgaggtcgaaaagcattcctcctctccggcctattaatgctaatctg |
27293281 |
T |
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| Q |
116 |
caaaattcccaacatttacaaaattgaataaaacaagaaaagaaaatgagaaaggtggaaggacaaccttggcaattccttcaccaatggatttctcata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27293282 |
caaaattcccaacatttacaaaattgaataaaacaagaaaagaaaatgagaaaggtggaaggacaaccttggcaattccttcaccaacggatttctcata |
27293381 |
T |
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| Q |
216 |
gataatgtcagtgaaaacctttccttcatcatcatcagaaggaaca |
261 |
Q |
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| T |
27293382 |
gagaatgtcagtgaaaacctttccttcatcatcatcagaaggaaca |
27293427 |
T |
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