View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_39 (Length: 257)
Name: NF5404_high_39
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 7621276 - 7621511
Alignment:
| Q |
18 |
agtttagatcaggttt-agcataatgtttaggcgcacacaatacgagatacatatttctnnnnnnnttatcttttatttgcgtgtttaaactctatacat |
116 |
Q |
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| T |
7621276 |
agtttagagcaggttttagcataatgtttaggcgcacacaatacgagatatatatttctaaaaaaatg-tcttttatttgcgtgtttaaactctatacat |
7621374 |
T |
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| Q |
117 |
ttgattttgtgattatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621375 |
ttgattttgtgattatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaa |
7621474 |
T |
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| Q |
217 |
gtaacaacaaagtactcaacaaatccctatgcttctc |
253 |
Q |
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| T |
7621475 |
gtaacaacaaagtactcaacaaatccttatgtttctc |
7621511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 7662804 - 7662679
Alignment:
| Q |
128 |
attatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
7662804 |
attatagaagagtaggtaacttaccaaaagtagtgctttaatttcaatataagtgagtttgtttccatcaacatccgtttcttctttaagtaacaacaaa |
7662705 |
T |
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| Q |
228 |
gtactcaacaaatccctatgcttctc |
253 |
Q |
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| T |
7662704 |
gtactcaacaaatccttatgtttctc |
7662679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 7667897 - 7667812
Alignment:
| Q |
138 |
agtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaa |
223 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7667897 |
agtagataacttatcaaaagtagtgctttgatttcaatataagtgagtttgtttccatcatcatccgtttcctctttaagtaacaa |
7667812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 7682303 - 7682185
Alignment:
| Q |
135 |
aagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaaagtactca |
234 |
Q |
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||||||| ||||| ||||| ||||||| || |||| ||||||| |||||||| |||||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
7682303 |
aagagtatgtaacataccataagtagtcctctgatctcaatatcagtgagttgatttccatcctcatatgtttcctctttaagtgacaacaaagtactca |
7682204 |
T |
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| Q |
235 |
acaaatccctatgcttctc |
253 |
Q |
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|||||||| |||| ||||| |
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| T |
7682203 |
acaaatccttatgtttctc |
7682185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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