View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_4 (Length: 596)
Name: NF5404_high_4
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 21 - 578
Target Start/End: Original strand, 698021 - 698579
Alignment:
| Q |
21 |
tttatacacaatatgatagttatgcatttagttgattatgttctatatgtattatgtatagggcttgactagaaatattactcatctaactgttctgttt |
120 |
Q |
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| T |
698021 |
tttatacataatatgatagttatgcatttagttgattatgttctatatgtattatgtatagggcttgactagaaatattactcatctaactgttctgttt |
698120 |
T |
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| Q |
121 |
tgtaggaacccttctgtatactttccttgtacgaacaagttggacatttctccggaagctatgggaatcttaactcagattgaagaagagttgctgctga |
220 |
Q |
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| T |
698121 |
tgtaggaacccttctgtatactttccttgtacgaacaagttggacatttctccggaagctatgggaatcttaactcagattgaagaagagttgctgctga |
698220 |
T |
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| Q |
221 |
ttgaagaaaaaattgataaagcaacaaattatcatcagaagtgtctacataaatttgagagaaaagagaagaaatataaaaaacttatggataaaattga |
320 |
Q |
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| T |
698221 |
ttgaagaaaaaattgataaagcaacaaattatcatcagaagtgtctacataaatttgagagaaaagagaagaaatataaaaaacttatggataaaattga |
698320 |
T |
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| Q |
321 |
gcctatggccgagttattggaacctaaaccagagattggaaccttggtaaacttatctgactgatctgttttttgttttcctatgcttttgatcattgag |
420 |
Q |
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| T |
698321 |
gcctatggccgagttattggaacctaaaccagagattgggaccttggtaaacttagctgactgatctgttttttgttttcctatgcttttgatcattgag |
698420 |
T |
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| Q |
421 |
cttagagctttggatagtgtgctttcttgtggagtttttggtggccggcgattaatgactgacttcagagg-aatattataggctttggttttctttcct |
519 |
Q |
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| T |
698421 |
cttagagctttggatagtgtgctttcttgtggagtttttggtggccggcaatcaatgactgacttcagaggaaatattataggctttggttttctttcct |
698520 |
T |
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| Q |
520 |
ttttatgaactaataggctttggttactgccatgggttaactgatgttgtgtatatatc |
578 |
Q |
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| T |
698521 |
ttttatgaactaataggctttggttactgccatgggttaactgatgttgtgtatatatc |
698579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 665591 - 665644
Alignment:
| Q |
391 |
ttttgttttcctatgcttttgatcattgagcttagagctttggatagtgtgcttt |
445 |
Q |
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| T |
665591 |
ttttgttttc-tatgcttttgttcattgagcttagagctttggatagtgtgcttt |
665644 |
T |
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