View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_40 (Length: 254)
Name: NF5404_high_40
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 31827636 - 31827763
Alignment:
| Q |
18 |
agaagaccaaatgtaagaatagcagtagtagtgttggagtatataagctgaagcctcactttactgacccctattgtgtagaactacaagttatttgttt |
117 |
Q |
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| T |
31827636 |
agaagaccaaatgtaagaatagcagtagtagtgttggagtatataagctgaagcctcactttactga-ccctattgtgtagaactacaagttatttgttt |
31827734 |
T |
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| Q |
118 |
gagtgaattcttttcttgagaagtgctta |
146 |
Q |
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| T |
31827735 |
gagtgaattcttttcttgagaagtgctta |
31827763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 31827799 - 31827848
Alignment:
| Q |
182 |
ctgttcagaatcagacaccattctgtgttctgtgttctctataataacca |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31827799 |
ctgttcagaatcagacaccattctgtgttctgtgttctctataataacca |
31827848 |
T |
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