View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_45 (Length: 246)
Name: NF5404_high_45
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15439680 - 15439464
Alignment:
| Q |
1 |
acggctcccataatatcacgcttggaaccatcatcctttgcaccagtgttatccataagtttccttttagacctttcagatggaacattcttgtgcttta |
100 |
Q |
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| T |
15439680 |
acggctcccctaatatcaagcttggaaccatcatcctttgcaccagtgttatccataagtttccgtttagacctttcagctggaacattcttgtgcttta |
15439581 |
T |
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| Q |
101 |
taatgggagcttcatttttcacattttctccctttaaaccacgaacctttggaccagtgctatccccaagtttccttgtagaactttcagccagaacatt |
200 |
Q |
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| T |
15439580 |
aaataggagcttcatttttcacattttctccctttaaaccacaatcctttggaccagtgttatcccaaagtttccttgtagaactttcagccagaacatt |
15439481 |
T |
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| Q |
201 |
cttctgcttgaaactag |
217 |
Q |
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| T |
15439480 |
cttctgctttaaactag |
15439464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 15439448 - 15439379
Alignment:
| Q |
131 |
cctttaaaccacgaacctttggaccagtgctatccccaagtttccttgtagaactttcagccagaacatt |
200 |
Q |
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| T |
15439448 |
ccttgaaaccacgatcctttggaccagtgttatccccaagtttccttttagaactttcagccagaacatt |
15439379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 15439379 - 15439338
Alignment:
| Q |
176 |
ttgtagaactttcagccagaacattcttctgcttgaaactag |
217 |
Q |
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| T |
15439379 |
ttgtagaactttcagccagaacattcttctgcttgaaactag |
15439338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 15439435 - 15439389
Alignment:
| Q |
33 |
atcctttgcaccagtgttatccataagtttccttttagacctttcag |
79 |
Q |
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| T |
15439435 |
atcctttggaccagtgttatccccaagtttccttttagaactttcag |
15439389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 52418415 - 52418317
Alignment:
| Q |
26 |
aaccatcatcctttgcaccagtgttatccataagtttccttttagacctttcagatggaacattcttgtgctttataatgggagcttcatttttcacat |
124 |
Q |
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| T |
52418415 |
aaccatcatcctttgcgcaagtgtttgccctaagtttccttttagacctttcatccgaaacttccttgtgcttgaaaataggagcttcatttttaacat |
52418317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 52418226 - 52418119
Alignment:
| Q |
106 |
ggagcttcatttttcacattttctccctttaaaccacgaacctttggaccagtgctatccccaagtttccttgtagaactttcagccagaacattcttct |
205 |
Q |
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||||||||||||| |||||| ||| |||| |||| | || | |||||||||||| || ||| |||||||| ||||| |||||||| ||| ||||||| |
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| T |
52418226 |
ggagcttcatttt-cacattatctaccttgaaactatgatcttttggaccagtgtgatacccgggtttccttttagaattttcagccgaaactttcttct |
52418128 |
T |
|
| Q |
206 |
gcttgaaac |
214 |
Q |
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||||||||| |
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| T |
52418127 |
gcttgaaac |
52418119 |
T |
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