View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_49 (Length: 240)
Name: NF5404_high_49
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 9451571 - 9451762
Alignment:
| Q |
29 |
aaaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcatt |
128 |
Q |
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| T |
9451571 |
aaaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcatt |
9451670 |
T |
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| Q |
129 |
tatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattat |
220 |
Q |
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| T |
9451671 |
tatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattat |
9451762 |
T |
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